RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 NME9Q86XW9 330 aa23.53■■□□□ 1.36
HMGN4-201ENST00000377575 WNK3Q9BYP7 1800 aa23.52■■□□□ 1.36
HMGN4-201ENST00000377575 MYOM1P52179 1685 aa23.52■■□□□ 1.36
HMGN4-201ENST00000377575 ARHGEF25Q86VW2 580 aa23.52■■□□□ 1.36
HMGN4-201ENST00000377575 USP35Q9P2H5 1018 aa23.52■■□□□ 1.36
HMGN4-201ENST00000377575 PARP4Q9UKK3 1724 aaKnown RBP23.51■■□□□ 1.35
HMGN4-201ENST00000377575 BARGINQ6ZT62 677 aa23.51■■□□□ 1.35
HMGN4-201ENST00000377575 OVOS2A0A0J9YW53 1432 aa23.5■■□□□ 1.35
HMGN4-201ENST00000377575 OVOS2Q6IE36 1432 aa23.5■■□□□ 1.35
HMGN4-201ENST00000377575 RGPD1P0DJD0 1748 aa23.5■■□□□ 1.35
HMGN4-201ENST00000377575 TCP11L2Q8N4U5 519 aa23.5■■□□□ 1.35
HMGN4-201ENST00000377575 THRAP3Q9Y2W1 955 aaKnown RBP23.5■■□□□ 1.35
HMGN4-201ENST00000377575 ZRANB1Q9UGI0 708 aa23.49■■□□□ 1.35
HMGN4-201ENST00000377575 KIF20BQ96Q89 1820 aa23.49■■□□□ 1.35
HMGN4-201ENST00000377575 SF3B2Q13435 895 aaKnown RBP23.47■■□□□ 1.35
HMGN4-201ENST00000377575 WDR17Q8IZU2 1322 aa23.46■■□□□ 1.35
HMGN4-201ENST00000377575 TOM1L2Q6ZVM7 507 aa23.45■■□□□ 1.34
HMGN4-201ENST00000377575 AXIN2Q9Y2T1 843 aa23.44■■□□□ 1.34
HMGN4-201ENST00000377575 LRRC37A3O60309 1634 aa23.44■■□□□ 1.34
HMGN4-201ENST00000377575 TNS1Q9HBL0 1735 aaKnown RBP23.42■■□□□ 1.34
HMGN4-201ENST00000377575 CSB-PGBD3P0DP91 1061 aa23.42■■□□□ 1.34
HMGN4-201ENST00000377575 EIF4G2P78344 907 aaKnown RBP eCLIP23.42■■□□□ 1.34
HMGN4-201ENST00000377575 COG3Q96JB2 828 aa23.42■■□□□ 1.34
HMGN4-201ENST00000377575 PDE3BQ13370 1112 aa23.41■■□□□ 1.34
HMGN4-201ENST00000377575 FAM208AQ9UK61 1670 aaKnown RBP23.41■■□□□ 1.34
HMGN4-201ENST00000377575 FAM182BQ5T319 152 aa23.38■■□□□ 1.33
HMGN4-201ENST00000377575 FAM196AQ6ZSG2 479 aa23.38■■□□□ 1.33
HMGN4-201ENST00000377575 CARD10Q9BWT7 1032 aa23.37■■□□□ 1.33
HMGN4-201ENST00000377575 CCDC7Q96M83 1385 aa23.37■■□□□ 1.33
HMGN4-201ENST00000377575 ERBB3P21860 1342 aa23.36■■□□□ 1.33
HMGN4-201ENST00000377575 HSPA5P11021 654 aaKnown RBP23.36■■□□□ 1.33
HMGN4-201ENST00000377575 BAG6P46379 1132 aa23.36■■□□□ 1.33
HMGN4-201ENST00000377575 CDCA7Q9BWT1 371 aaPredicted RBP23.36■■□□□ 1.33
HMGN4-201ENST00000377575 NSD3Q9BZ95 1437 aa23.34■■□□□ 1.33
HMGN4-201ENST00000377575 PEAK1Q9H792 1746 aa23.34■■□□□ 1.33
HMGN4-201ENST00000377575 DEFB132Q7Z7B7 95 aa23.34■■□□□ 1.33
HMGN4-201ENST00000377575 C11orf95C9JLR9 678 aaPredicted RBP23.33■■□□□ 1.33
HMGN4-201ENST00000377575 OVOS2A0A0G2JMS6 1433 aa23.33■■□□□ 1.32
HMGN4-201ENST00000377575 DISP2A7MBM2 1401 aa23.33■■□□□ 1.32
HMGN4-201ENST00000377575 FYB1O15117 783 aa23.32■■□□□ 1.32
HMGN4-201ENST00000377575 DDB1Q16531 1140 aa23.32■■□□□ 1.32
HMGN4-201ENST00000377575 POLR3GLQ9BT43 218 aa23.32■■□□□ 1.32
HMGN4-201ENST00000377575 RTL1A6NKG5 1358 aa23.31■■□□□ 1.32
HMGN4-201ENST00000377575 ANKRD24Q8TF21 1146 aa23.31■■□□□ 1.32
HMGN4-201ENST00000377575 IP6K1Q92551 441 aa23.31■■□□□ 1.32
HMGN4-201ENST00000377575 GGNBP2Q9H3C7 697 aa23.31■■□□□ 1.32
HMGN4-201ENST00000377575 SBF2Q86WG5 1849 aa23.31■■□□□ 1.32
HMGN4-201ENST00000377575 ANKRD26Q9UPS8 1709 aa23.3■■□□□ 1.32
HMGN4-201ENST00000377575 MAP3K19Q56UN5 1328 aa23.3■■□□□ 1.32
HMGN4-201ENST00000377575 NLRP2Q9NX02 1062 aa23.29■■□□□ 1.32
HMGN4-201ENST00000377575 TNS2Q63HR2 1409 aa23.28■■□□□ 1.32
HMGN4-201ENST00000377575 TRIM37O94972 964 aa23.28■■□□□ 1.32
HMGN4-201ENST00000377575 AMPHP49418 695 aa23.28■■□□□ 1.32
HMGN4-201ENST00000377575 CARD14Q9BXL6 1004 aa23.27■■□□□ 1.32
HMGN4-201ENST00000377575 HOXC9P31274 260 aa23.26■■□□□ 1.31
HMGN4-201ENST00000377575 CGNL1Q0VF96 1302 aa23.26■■□□□ 1.31
HMGN4-201ENST00000377575 RGPD2P0DJD1 1756 aa23.25■■□□□ 1.31
HMGN4-201ENST00000377575 RREB1Q92766 1687 aa23.24■■□□□ 1.31
HMGN4-201ENST00000377575 PARD3Q8TEW0 1356 aa23.24■■□□□ 1.31
HMGN4-201ENST00000377575 RGPD3A6NKT7 1758 aaPredicted RBP23.24■■□□□ 1.31
HMGN4-201ENST00000377575 RGPD4Q7Z3J3 1758 aa23.24■■□□□ 1.31
HMGN4-201ENST00000377575 SMG6Q86US8 1419 aaKnown RBP23.24■■□□□ 1.31
HMGN4-201ENST00000377575 EXOC5O00471 708 aa23.23■■□□□ 1.31
HMGN4-201ENST00000377575 EN1Q05925 392 aaPredicted RBP23.23■■□□□ 1.31
HMGN4-201ENST00000377575 RRS1Q15050 365 aaKnown RBP23.23■■□□□ 1.31
HMGN4-201ENST00000377575 LTV1Q96GA3 475 aaPredicted RBP23.23■■□□□ 1.31
HMGN4-201ENST00000377575 KIF24Q5T7B8 1368 aa23.23■■□□□ 1.31
HMGN4-201ENST00000377575 BCL9O00512 1426 aa23.23■■□□□ 1.31
HMGN4-201ENST00000377575 IL2RBP14784 551 aa23.22■■□□□ 1.31
HMGN4-201ENST00000377575 FBLN1P23142 703 aa23.22■■□□□ 1.31
HMGN4-201ENST00000377575 APBA3O96018 575 aa23.21■■□□□ 1.31
HMGN4-201ENST00000377575 FLT4P35916 1363 aa23.21■■□□□ 1.31
HMGN4-201ENST00000377575 MAP2P11137 1827 aaKnown RBP23.2■■□□□ 1.3
HMGN4-201ENST00000377575 MARCH10Q8NA82 808 aaPredicted RBP23.2■■□□□ 1.3
HMGN4-201ENST00000377575 NUP188Q5SRE5 1749 aa23.19■■□□□ 1.3
HMGN4-201ENST00000377575 NHSQ6T4R5 1651 aa23.18■■□□□ 1.3
HMGN4-201ENST00000377575 INSRP06213 1382 aa23.17■■□□□ 1.3
HMGN4-201ENST00000377575 EZH2Q15910 746 aaKnown RBP23.16■■□□□ 1.3
HMGN4-201ENST00000377575 CAMKK2Q96RR4 588 aa23.16■■□□□ 1.3
HMGN4-201ENST00000377575 PANK3Q9H999 370 aa23.16■■□□□ 1.3
HMGN4-201ENST00000377575 NSD2O96028 1365 aa23.15■■□□□ 1.3
HMGN4-201ENST00000377575 SHANK3Q9BYB0 1731 aa23.13■■□□□ 1.29
HMGN4-201ENST00000377575 BCL11BQ9C0K0 894 aaPredicted RBP23.13■■□□□ 1.29
HMGN4-201ENST00000377575 EMILIN1Q9Y6C2 1016 aa23.12■■□□□ 1.29
HMGN4-201ENST00000377575 KIF7Q2M1P5 1343 aa23.11■■□□□ 1.29
HMGN4-201ENST00000377575 HSP90AB2PQ58FF8 381 aa23.11■■□□□ 1.29
HMGN4-201ENST00000377575 MEGF6O75095 1541 aa23.11■■□□□ 1.29
HMGN4-201ENST00000377575 KAT6BQ8WYB5 2073 aa23.1■■□□□ 1.29
HMGN4-201ENST00000377575 PPM1GO15355 546 aaPredicted RBP23.09■■□□□ 1.29
HMGN4-201ENST00000377575 PLSCR1O15162 318 aa23.08■■□□□ 1.29
HMGN4-201ENST00000377575 NBPF6Q5VWK0 638 aa23.08■■□□□ 1.29
HMGN4-201ENST00000377575 NBPF4Q96M43 638 aa23.08■■□□□ 1.29
HMGN4-201ENST00000377575 BTAF1O14981 1849 aa23.08■■□□□ 1.28
HMGN4-201ENST00000377575 LRP5O75197 1615 aa23.08■■□□□ 1.28
HMGN4-201ENST00000377575 KNSTRNQ9Y448 316 aa23.07■■□□□ 1.28
HMGN4-201ENST00000377575 DOT1LQ8TEK3 1739 aa23.07■■□□□ 1.28
HMGN4-201ENST00000377575 SRCAPQ6ZRS2 3230 aa23.06■■□□□ 1.28
HMGN4-201ENST00000377575 PSDA5PKW4 1024 aaPredicted RBP23.06■■□□□ 1.28
HMGN4-201ENST00000377575 RAPGEF4Q8WZA2 1011 aa23.06■■□□□ 1.28
HMGN4-201ENST00000377575 WASHC2AQ641Q2 1341 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms