RNA–Protein interactions for RNA: ENST00000370544.9

LMO4-202, Transcript of LIM domain only 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMO4, Length 5,405 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4-202ENST00000370544 PRDM11Q9NQV5 511 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 LETM1O95202 739 aaPredicted RBP23.51■■□□□ 1.35
LMO4-202ENST00000370544 MBD3O95983 291 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 NASPP49321 788 aaPredicted RBP23.51■■□□□ 1.35
LMO4-202ENST00000370544 ZNF428Q96B54 188 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 IFT57Q9NWB7 429 aa23.51■■□□□ 1.35
LMO4-202ENST00000370544 SLFN5Q08AF3 891 aa23.5■■□□□ 1.35
LMO4-202ENST00000370544 CWC22Q9HCG8 908 aaKnown RBP23.5■■□□□ 1.35
LMO4-202ENST00000370544 CYP46A1Q9Y6A2 500 aa23.5■■□□□ 1.35
LMO4-202ENST00000370544 CAVIN1Q6NZI2 390 aaKnown RBP23.5■■□□□ 1.35
LMO4-202ENST00000370544 MAP4K4O95819 1239 aaPredicted RBP23.49■■□□□ 1.35
LMO4-202ENST00000370544 XPCQ01831 940 aaPredicted RBP23.49■■□□□ 1.35
LMO4-202ENST00000370544 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.49■■□□□ 1.35
LMO4-202ENST00000370544 ADGRL1O94910 1474 aa23.49■■□□□ 1.35
LMO4-202ENST00000370544 IKQ13123 557 aaPredicted RBP23.49■■□□□ 1.35
LMO4-202ENST00000370544 GRIN2AQ12879 1464 aa23.49■■□□□ 1.35
LMO4-202ENST00000370544 RNF214Q8ND24 703 aa23.48■■□□□ 1.35
LMO4-202ENST00000370544 PRPF40AO75400 957 aaKnown RBP23.48■■□□□ 1.35
LMO4-202ENST00000370544 NUTM2BA6NNL0 878 aaPredicted RBP23.48■■□□□ 1.35
LMO4-202ENST00000370544 GNAT3A8MTJ3 354 aa23.48■■□□□ 1.35
LMO4-202ENST00000370544 NUTM2EB1AL46 878 aaPredicted RBP23.48■■□□□ 1.35
LMO4-202ENST00000370544 SRGAP3O43295 1099 aa23.48■■□□□ 1.35
LMO4-202ENST00000370544 NUTM2AQ8IVF1 878 aaPredicted RBP23.48■■□□□ 1.35
LMO4-202ENST00000370544 WAPLQ7Z5K2 1190 aa23.47■■□□□ 1.35
LMO4-202ENST00000370544 BACH2Q9BYV9 841 aa23.47■■□□□ 1.35
LMO4-202ENST00000370544 KINO60870 393 aaKnown RBP23.47■■□□□ 1.35
LMO4-202ENST00000370544 CCDC57Q2TAC2 916 aa23.47■■□□□ 1.35
LMO4-202ENST00000370544 AACSQ86V21 672 aa23.47■■□□□ 1.35
LMO4-202ENST00000370544 ZNF396Q96N95 335 aaPredicted RBP23.47■■□□□ 1.35
LMO4-202ENST00000370544 CCDC39Q9UFE4 941 aa23.46■■□□□ 1.35
LMO4-202ENST00000370544 ATP2B1P20020 1258 aa23.46■■□□□ 1.35
LMO4-202ENST00000370544 FAM43AQ8N2R8 423 aa23.46■■□□□ 1.35
LMO4-202ENST00000370544 ANKRD1Q15327 319 aa23.45■■□□□ 1.34
LMO4-202ENST00000370544 KCNH5Q8NCM2 988 aa23.45■■□□□ 1.34
LMO4-202ENST00000370544 MAP3K1Q13233 1512 aa23.44■■□□□ 1.34
LMO4-202ENST00000370544 FIBPO43427 364 aa23.44■■□□□ 1.34
LMO4-202ENST00000370544 FAM135AQ9P2D6 1515 aa23.44■■□□□ 1.34
LMO4-202ENST00000370544 NAP1L1P55209 391 aaKnown RBP23.44■■□□□ 1.34
LMO4-202ENST00000370544 RPAP2Q8IXW5 612 aaPredicted RBP23.44■■□□□ 1.34
LMO4-202ENST00000370544 NACAP1Q9BZK3 213 aa23.43■■□□□ 1.34
LMO4-202ENST00000370544 K7ELQ4 463 aaPredicted RBP23.43■■□□□ 1.34
LMO4-202ENST00000370544 PDILTQ8N807 584 aa23.43■■□□□ 1.34
LMO4-202ENST00000370544 TSPY26PQ9H489 355 aa23.43■■□□□ 1.34
LMO4-202ENST00000370544 ZC3H6P61129 1189 aaKnown RBP23.43■■□□□ 1.34
LMO4-202ENST00000370544 TMEM57Q8N5G2 664 aa23.43■■□□□ 1.34
LMO4-202ENST00000370544 MPHOSPH8Q99549 860 aa23.43■■□□□ 1.34
LMO4-202ENST00000370544 STK38Q15208 465 aa23.42■■□□□ 1.34
LMO4-202ENST00000370544 STK3Q13188 491 aa23.42■■□□□ 1.34
LMO4-202ENST00000370544 AEBP1Q8IUX7 1158 aa23.42■■□□□ 1.34
LMO4-202ENST00000370544 EPS15P42566 896 aa23.42■■□□□ 1.34
LMO4-202ENST00000370544 ZSCAN25Q6NSZ9 544 aa23.42■■□□□ 1.34
LMO4-202ENST00000370544 CEBPZQ03701 1054 aaKnown RBP23.41■■□□□ 1.34
LMO4-202ENST00000370544 MNS1Q8NEH6 495 aa23.41■■□□□ 1.34
LMO4-202ENST00000370544 TRIM5Q9C035 493 aa23.4■■□□□ 1.34
LMO4-202ENST00000370544 MCM10Q7L590 875 aa23.4■■□□□ 1.34
LMO4-202ENST00000370544 PHF23Q9BUL5 403 aaPredicted RBP23.4■■□□□ 1.34
LMO4-202ENST00000370544 IL1RAPL2Q9NP60 686 aa23.4■■□□□ 1.34
LMO4-202ENST00000370544 MIS18AQ9NYP9 233 aa23.4■■□□□ 1.34
LMO4-202ENST00000370544 THUMPD2Q9BTF0 503 aaKnown RBP23.39■■□□□ 1.34
LMO4-202ENST00000370544 BICRAQ9NZM4 1560 aa23.39■■□□□ 1.34
LMO4-202ENST00000370544 FKBP4Q02790 459 aaKnown RBP eCLIP23.39■■□□□ 1.34
LMO4-202ENST00000370544 TXLNAP40222 546 aa23.39■■□□□ 1.33
LMO4-202ENST00000370544 DUSP27Q5VZP5 1158 aa23.39■■□□□ 1.33
LMO4-202ENST00000370544 FAM13BQ9NYF5 915 aa23.38■■□□□ 1.33
LMO4-202ENST00000370544 CDK5RAP3Q96JB5 506 aa23.38■■□□□ 1.33
LMO4-202ENST00000370544 WDR33Q9C0J8 1336 aaKnown RBP23.38■■□□□ 1.33
LMO4-202ENST00000370544 ADGRF5Q8IZF2 1346 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 CEP126Q9P2H0 1117 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 SMC2O95347 1197 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 NME9Q86XW9 330 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 TRIM22Q8IYM9 498 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 STK11IPQ8N1F8 1099 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 CCDC69A6NI79 296 aa23.37■■□□□ 1.33
LMO4-202ENST00000370544 C11orf95C9JLR9 678 aaPredicted RBP23.37■■□□□ 1.33
LMO4-202ENST00000370544 CWC27Q6UX04 472 aaKnown RBP23.36■■□□□ 1.33
LMO4-202ENST00000370544 JMYQ8N9B5 988 aa23.36■■□□□ 1.33
LMO4-202ENST00000370544 OFD1O75665 1012 aa23.36■■□□□ 1.33
LMO4-202ENST00000370544 NCOA1Q15788 1441 aa23.36■■□□□ 1.33
LMO4-202ENST00000370544 CT47A1Q5JQC4 288 aaPredicted RBP23.36■■□□□ 1.33
LMO4-202ENST00000370544 ABCC11Q96J66 1382 aa23.35■■□□□ 1.33
LMO4-202ENST00000370544 BLOC1S2Q6QNY1 142 aa23.35■■□□□ 1.33
LMO4-202ENST00000370544 ARGLU1Q9NWB6 273 aaPredicted RBP23.35■■□□□ 1.33
LMO4-202ENST00000370544 PDRG1Q9NUG6 133 aa23.34■■□□□ 1.33
LMO4-202ENST00000370544 DCTN1Q14203 1278 aa23.34■■□□□ 1.33
LMO4-202ENST00000370544 FMNL2Q96PY5 1086 aa23.34■■□□□ 1.33
LMO4-202ENST00000370544 ALDH1L2Q3SY69 923 aa23.34■■□□□ 1.33
LMO4-202ENST00000370544 JAKMIP1Q96N16 626 aaKnown RBP23.33■■□□□ 1.33
LMO4-202ENST00000370544 LARP1BQ659C4 914 aaKnown RBP23.32■■□□□ 1.32
LMO4-202ENST00000370544 NUTM1Q86Y26 1132 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 FILIP1LQ4L180 1135 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 TEX35Q5T0J7 233 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 ATP2B2Q01814 1243 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 CTNNA3Q9UI47 895 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 EXOC6BQ9Y2D4 811 aa23.32■■□□□ 1.32
LMO4-202ENST00000370544 RARSP54136 660 aaKnown RBP23.32■■□□□ 1.32
LMO4-202ENST00000370544 ZNF771Q7L3S4 317 aaPredicted RBP23.32■■□□□ 1.32
LMO4-202ENST00000370544 NKTRP30414 1462 aaKnown RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 WASLO00401 505 aaPredicted RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 FBXO31Q5XUX0 539 aaPredicted RBP23.31■■□□□ 1.32
LMO4-202ENST00000370544 NUP133Q8WUM0 1156 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms