RNA–Protein interactions for RNA: ENST00000357475.8

SSBP3-202, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best) BASIC

Gene SSBP3, Length 1,533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-202ENST00000357475 PRDM11Q9NQV5 511 aa34.26■■■■□ 3.08
SSBP3-202ENST00000357475 AXIN2Q9Y2T1 843 aa34.26■■■■□ 3.08
SSBP3-202ENST00000357475 HSP90AB2PQ58FF8 381 aa34.25■■■■□ 3.07
SSBP3-202ENST00000357475 COL3A1P02461 1466 aaPredicted RBP34.25■■■■□ 3.07
SSBP3-202ENST00000357475 FLT4P35916 1363 aa34.24■■■■□ 3.07
SSBP3-202ENST00000357475 COL14A1Q05707 1796 aaKnown RBP34.23■■■■□ 3.07
SSBP3-202ENST00000357475 IP6K1Q92551 441 aa34.22■■■■□ 3.07
SSBP3-202ENST00000357475 RTL1A6NKG5 1358 aa34.22■■■■□ 3.07
SSBP3-202ENST00000357475 PLCH1Q4KWH8 1693 aa34.22■■■■□ 3.07
SSBP3-202ENST00000357475 CAMTA1Q9Y6Y1 1673 aa34.21■■■■□ 3.07
SSBP3-202ENST00000357475 KIF24Q5T7B8 1368 aa34.2■■■■□ 3.06
SSBP3-202ENST00000357475 ILDR1Q86SU0 546 aaPredicted RBP34.19■■■■□ 3.06
SSBP3-202ENST00000357475 ABCC6O95255 1503 aa34.18■■■■□ 3.06
SSBP3-202ENST00000357475 INSRP06213 1382 aa34.17■■■■□ 3.06
SSBP3-202ENST00000357475 RGPD2P0DJD1 1756 aa34.16■■■■□ 3.06
SSBP3-202ENST00000357475 LTV1Q96GA3 475 aaPredicted RBP34.15■■■■□ 3.06
SSBP3-202ENST00000357475 MRS2Q9HD23 443 aa34.14■■■■□ 3.06
SSBP3-202ENST00000357475 BLMP54132 1417 aaPredicted RBP34.14■■■■□ 3.06
SSBP3-202ENST00000357475 EIF4A2Q14240 407 aaKnown RBP34.14■■■■□ 3.06
SSBP3-202ENST00000357475 C8orf37Q96NL8 207 aa34.14■■■■□ 3.06
SSBP3-202ENST00000357475 NRAPQ86VF7 1730 aa34.12■■■■□ 3.05
SSBP3-202ENST00000357475 CCER2I3L3R5 266 aa34.12■■■■□ 3.05
SSBP3-202ENST00000357475 CFAP53Q96M91 514 aa34.12■■■■□ 3.05
SSBP3-202ENST00000357475 BTG4Q9NY30 223 aa34.12■■■■□ 3.05
SSBP3-202ENST00000357475 COL5A2P05997 1499 aaPredicted RBP34.11■■■■□ 3.05
SSBP3-202ENST00000357475 IL13P35225 146 aa34.09■■■■□ 3.05
SSBP3-202ENST00000357475 MEX3CQ5U5Q3 659 aaKnown RBP34.09■■■■□ 3.05
SSBP3-202ENST00000357475 ANKRD24Q8TF21 1146 aa34.09■■■■□ 3.05
SSBP3-202ENST00000357475 NWD2Q9ULI1 1742 aa34.09■■■■□ 3.05
SSBP3-202ENST00000357475 SLIT2O94813 1529 aa34.09■■■■□ 3.05
SSBP3-202ENST00000357475 ERBB3P21860 1342 aa34.08■■■■□ 3.05
SSBP3-202ENST00000357475 DIAPH1O60610 1272 aaKnown RBP34.08■■■■□ 3.05
SSBP3-202ENST00000357475 RGPD1P0DJD0 1748 aa34.07■■■■□ 3.05
SSBP3-202ENST00000357475 NGLY1Q96IV0 654 aa34.07■■■■□ 3.04
SSBP3-202ENST00000357475 STRN4Q9NRL3 753 aa34.05■■■■□ 3.04
SSBP3-202ENST00000357475 BCL9LQ86UU0 1499 aa34.02■■■■□ 3.04
SSBP3-202ENST00000357475 FAM208AQ9UK61 1670 aaKnown RBP34.02■■■■□ 3.04
SSBP3-202ENST00000357475 LARP1Q6PKG0 1096 aaKnown RBP34.01■■■■□ 3.04
SSBP3-202ENST00000357475 PNISRQ8TF01 805 aaKnown RBP34.01■■■■□ 3.04
SSBP3-202ENST00000357475 U2SURPO15042 1029 aaKnown RBP34■■■■□ 3.03
SSBP3-202ENST00000357475 FNBP4Q8N3X1 1017 aaPredicted RBP34■■■■□ 3.03
SSBP3-202ENST00000357475 EYA1Q99502 592 aa34■■■■□ 3.03
SSBP3-202ENST00000357475 CSB-PGBD3P0DP91 1061 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 NBPF6Q5VWK0 638 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 NBPF4Q96M43 638 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 AFF2P51816 1311 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 WDR17Q8IZU2 1322 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 EVA1CP58658 441 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 USHBP1Q8N6Y0 703 aa33.99■■■■□ 3.03
SSBP3-202ENST00000357475 TNKS1BP1Q9C0C2 1729 aaKnown RBP33.97■■■■□ 3.03
SSBP3-202ENST00000357475 AEBP1Q8IUX7 1158 aa33.95■■■■□ 3.03
SSBP3-202ENST00000357475 IGSF1Q8N6C5 1336 aa33.95■■■■□ 3.03
SSBP3-202ENST00000357475 UNC5CLQ8IV45 518 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 NLRP2Q9NX02 1062 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 USP21Q9UK80 565 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 NUDCQ9Y266 331 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 HMOX1P09601 288 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 U2AF1L5P0DN76 240 aaPredicted RBP33.94■■■■□ 3.02
SSBP3-202ENST00000357475 U2AF1Q01081 240 aaKnown RBP eCLIP33.94■■■■□ 3.02
SSBP3-202ENST00000357475 ADAMTS8Q9UP79 889 aa33.94■■■■□ 3.02
SSBP3-202ENST00000357475 TOM1L2Q6ZVM7 507 aa33.93■■■■□ 3.02
SSBP3-202ENST00000357475 FAM9BQ8IZU0 186 aa33.93■■■■□ 3.02
SSBP3-202ENST00000357475 WDR43Q15061 677 aaKnown RBP eCLIP33.91■■■■□ 3.02
SSBP3-202ENST00000357475 CRB1P82279 1406 aa33.91■■■■□ 3.02
SSBP3-202ENST00000357475 SULT6B1Q6IMI4 303 aa33.9■■■■□ 3.02
SSBP3-202ENST00000357475 NCAPD2Q15021 1401 aa33.9■■■■□ 3.02
SSBP3-202ENST00000357475 USP35Q9P2H5 1018 aa33.89■■■■□ 3.02
SSBP3-202ENST00000357475 CARD10Q9BWT7 1032 aa33.86■■■■□ 3.01
SSBP3-202ENST00000357475 RSPH6AQ9H0K4 717 aa33.85■■■■□ 3.01
SSBP3-202ENST00000357475 KDRP35968 1356 aa33.85■■■■□ 3.01
SSBP3-202ENST00000357475 WNK3Q9BYP7 1800 aa33.83■■■■□ 3.01
SSBP3-202ENST00000357475 SPATA31A1Q5TZJ5 1347 aa33.83■■■■□ 3.01
SSBP3-202ENST00000357475 SPATA31A5Q5VU36 1347 aa33.83■■■■□ 3.01
SSBP3-202ENST00000357475 SPATA31A7Q8IWB4 1347 aa33.83■■■■□ 3.01
SSBP3-202ENST00000357475 VPS72Q15906 364 aa33.83■■■■□ 3.01
SSBP3-202ENST00000357475 CCDC9Q9Y3X0 531 aaKnown RBP33.83■■■■□ 3.01
SSBP3-202ENST00000357475 ATRNO75882 1429 aa33.82■■■■□ 3
SSBP3-202ENST00000357475 CCDC146Q8IYE0 955 aa33.82■■■■□ 3
SSBP3-202ENST00000357475 MEGF6O75095 1541 aa33.8■■■■□ 3
SSBP3-202ENST00000357475 GLI3P10071 1580 aa33.8■■■■□ 3
SSBP3-202ENST00000357475 PRKAR2BP31323 418 aa33.79■■■■□ 3
SSBP3-202ENST00000357475 RGS17Q9UGC6 210 aaPredicted RBP33.79■■■■□ 3
SSBP3-202ENST00000357475 FCHSD2O94868 740 aa33.78■■■■□ 3
SSBP3-202ENST00000357475 PLEKHF1Q96S99 279 aa33.78■■■■□ 3
SSBP3-202ENST00000357475 SENP3-EIF4A1A0A087X0R7 540 aa33.77■■■■□ 3
SSBP3-202ENST00000357475 TCP11L2Q8N4U5 519 aa33.75■■■□□ 2.99
SSBP3-202ENST00000357475 PHACTR3Q96KR7 559 aa33.75■■■□□ 2.99
SSBP3-202ENST00000357475 QTRT2Q9H974 415 aaKnown RBP33.75■■■□□ 2.99
SSBP3-202ENST00000357475 TRPC5Q9UL62 973 aaPredicted RBP33.75■■■□□ 2.99
SSBP3-202ENST00000357475 PARP4Q9UKK3 1724 aaKnown RBP33.74■■■□□ 2.99
SSBP3-202ENST00000357475 DISP2A7MBM2 1401 aa33.74■■■□□ 2.99
SSBP3-202ENST00000357475 ZNF772Q68DY9 489 aaPredicted RBP33.72■■■□□ 2.99
SSBP3-202ENST00000357475 GJD4Q96KN9 370 aaPredicted RBP33.72■■■□□ 2.99
SSBP3-202ENST00000357475 RAPGEF4Q8WZA2 1011 aa33.7■■■□□ 2.99
SSBP3-202ENST00000357475 IL2RBP14784 551 aa33.69■■■□□ 2.98
SSBP3-202ENST00000357475 OVOS2A0A0G2JMS6 1433 aa33.69■■■□□ 2.98
SSBP3-202ENST00000357475 FAM98CQ17RN3 349 aaKnown RBP33.69■■■□□ 2.98
SSBP3-202ENST00000357475 PKD1L3Q7Z443 1732 aa33.69■■■□□ 2.98
SSBP3-202ENST00000357475 PHF23Q9BUL5 403 aaPredicted RBP33.69■■■□□ 2.98
SSBP3-202ENST00000357475 SHANK3Q9BYB0 1731 aa33.69■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms