RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 EXOC6BQ9Y2D4 811 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 CCDC88BA6NC98 1476 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 MYCP01106 439 aaPredicted RBP8.81□□□□□ -1
VPS13A-202ENST00000357409 TDO2P48775 406 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 FAM193AP78312 1265 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 RNF20Q5VTR2 975 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 CCDC30Q5VVM6 783 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 TAF3Q5VWG9 929 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 PANK2Q9BZ23 570 aa8.81□□□□□ -1
VPS13A-202ENST00000357409 CCDC69A6NI79 296 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 CENPHQ9H3R5 247 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 CCDC144AA2RUR9 1427 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 POLR3DP05423 398 aaPredicted RBP8.8□□□□□ -1
VPS13A-202ENST00000357409 SYCP1Q15431 976 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 INTS3Q68E01 1043 aaKnown RBP8.8□□□□□ -1
VPS13A-202ENST00000357409 CNTROBQ8N137 903 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 PDZRN3Q9UPQ7 1066 aa8.8□□□□□ -1
VPS13A-202ENST00000357409 CRACR2BQ8N4Y2 399 aaPredicted RBP8.79□□□□□ -1
VPS13A-202ENST00000357409 MKNK2Q9HBH9 465 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 C8orf37Q96NL8 207 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 DDX19BQ9UMR2 479 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 CENPQQ7L2Z9 268 aaPredicted RBP8.79□□□□□ -1
VPS13A-202ENST00000357409 TAX1BP1Q86VP1 789 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 CAMK4Q16566 473 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 TSHZ3Q63HK5 1081 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 AKNAD1Q5T1N1 836 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 C22orf23Q9BZE7 217 aa8.79□□□□□ -1
VPS13A-202ENST00000357409 API5Q9BZZ5 524 aaKnown RBP8.79□□□□□ -1
VPS13A-202ENST00000357409 AACSQ86V21 672 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 METTL24Q5JXM2 366 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 OLFM4Q6UX06 510 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 SRGAP3O43295 1099 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 ZPR1O75312 459 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 LRRFIP1Q32MZ4 808 aaKnown RBP8.78□□□□□ -1
VPS13A-202ENST00000357409 CCDC180Q9P1Z9 1646 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 GNAI1P63096 354 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 SOGA3Q5TF21 947 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 FERMT3Q86UX7 667 aa8.78□□□□□ -1
VPS13A-202ENST00000357409 NEBLO76041 1014 aa8.77□□□□□ -1
VPS13A-202ENST00000357409 NOM1Q5C9Z4 860 aaKnown RBP8.77□□□□□ -1
VPS13A-202ENST00000357409 ANKRD20A12PQ8NF67 263 aa8.77□□□□□ -1
VPS13A-202ENST00000357409 RAD54L2Q9Y4B4 1467 aa8.77□□□□□ -1
VPS13A-202ENST00000357409 HSP90AB3PQ58FF7 597 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 EP400NLQ6ZTU2 488 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 SERPINA10Q9UK55 444 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 BRMS1Q9HCU9 246 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 CCT2P78371 535 aaKnown RBP8.77□□□□□ -1.01
VPS13A-202ENST00000357409 PICALMQ13492 652 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC73Q6ZRK6 1079 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 CPLX3Q8WVH0 158 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 EIF3AQ14152 1382 aaKnown RBP8.77□□□□□ -1.01
VPS13A-202ENST00000357409 GPRASP1Q5JY77 1395 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 RUFY1Q96T51 708 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 SMARCA2P51531 1590 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 KLHL10Q6JEL2 608 aa8.77□□□□□ -1.01
VPS13A-202ENST00000357409 SRRTQ9BXP5 876 aaKnown RBP8.77□□□□□ -1.01
VPS13A-202ENST00000357409 FHAD1B1AJZ9 1412 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 ERC2O15083 957 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 DPH6Q7L8W6 267 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 RANBP6O60518 1105 aaKnown RBP8.76□□□□□ -1.01
VPS13A-202ENST00000357409 PPARDQ03181 441 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 SERPINC1P01008 464 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 HSP90AA4PQ58FG1 418 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 XBP1P17861 261 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 DHX57Q6P158 1386 aaKnown RBP8.76□□□□□ -1.01
VPS13A-202ENST00000357409 SLC39A6Q13433 755 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 SPTY2D1Q68D10 685 aaPredicted RBP8.76□□□□□ -1.01
VPS13A-202ENST00000357409 ANKLE2Q86XL3 938 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 TRIM5Q9C035 493 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 KIF20AO95235 890 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 HAND2P61296 217 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 SP4Q02446 784 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 GSE1Q14687 1217 aa8.76□□□□□ -1.01
VPS13A-202ENST00000357409 DEF6Q9H4E7 631 aa8.75□□□□□ -1.01
VPS13A-202ENST00000357409 GJA3Q9Y6H8 435 aa8.75□□□□□ -1.01
VPS13A-202ENST00000357409 MNS1Q8NEH6 495 aa8.75□□□□□ -1.01
VPS13A-202ENST00000357409 TRMT112Q9UI30 125 aaKnown RBP8.75□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC96Q2M329 555 aa8.75□□□□□ -1.01
VPS13A-202ENST00000357409 UBAP1LF5GYI3 381 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 HSP90AA2PQ14568 343 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-202ENST00000357409 GNAI2P04899 355 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 FAM212AQ96EL1 285 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 MAGEC2Q9UBF1 373 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC70Q6NSX1 233 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 JAKMIP1Q96N16 626 aaKnown RBP8.74□□□□□ -1.01
VPS13A-202ENST00000357409 TMOD3Q9NYL9 352 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 ME1P48163 572 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 GDPD2Q9HCC8 539 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 SPG7Q9UQ90 795 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 KIF15Q9NS87 1388 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 CCDC83Q8IWF9 413 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 REC8O95072 547 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 FAM83GA6ND36 823 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 STK38Q15208 465 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 FILIP1Q7Z7B0 1213 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 NME9Q86XW9 330 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 HELBQ8NG08 1087 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-202ENST00000357409 USP47Q96K76 1375 aa8.74□□□□□ -1.01
VPS13A-202ENST00000357409 SBNO2Q9Y2G9 1366 aa8.73□□□□□ -1.01
VPS13A-202ENST00000357409 TAF7Q15545 349 aaPredicted RBP8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 116.8 ms