RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 CNGB1Q14028 1251 aaPredicted RBP28.43■■■□□ 2.14
SMARCB1-202ENST00000344921 RRS1Q15050 365 aaKnown RBP28.43■■■□□ 2.14
SMARCB1-202ENST00000344921 AXIN2Q9Y2T1 843 aa28.43■■■□□ 2.14
SMARCB1-202ENST00000344921 AMPHP49418 695 aa28.43■■■□□ 2.14
SMARCB1-202ENST00000344921 GJD4Q96KN9 370 aaPredicted RBP28.43■■■□□ 2.14
SMARCB1-202ENST00000344921 AMER1Q5JTC6 1135 aaPredicted RBP28.42■■■□□ 2.14
SMARCB1-202ENST00000344921 MORC1Q86VD1 984 aa28.42■■■□□ 2.14
SMARCB1-202ENST00000344921 ANKRD26Q9UPS8 1709 aa28.42■■■□□ 2.14
SMARCB1-202ENST00000344921 MAP3K19Q56UN5 1328 aa28.41■■■□□ 2.14
SMARCB1-202ENST00000344921 COL18A1P39060 1754 aa28.41■■■□□ 2.14
SMARCB1-202ENST00000344921 CC2D1BQ5T0F9 858 aaKnown RBP28.4■■■□□ 2.14
SMARCB1-202ENST00000344921 RGPD5Q99666 1765 aa28.39■■■□□ 2.14
SMARCB1-202ENST00000344921 ILDR2Q71H61 639 aa28.39■■■□□ 2.14
SMARCB1-202ENST00000344921 COL5A2P05997 1499 aaPredicted RBP28.39■■■□□ 2.13
SMARCB1-202ENST00000344921 CSB-PGBD3P0DP91 1061 aa28.38■■■□□ 2.13
SMARCB1-202ENST00000344921 LARP1Q6PKG0 1096 aaKnown RBP28.38■■■□□ 2.13
SMARCB1-202ENST00000344921 DDX10Q13206 875 aaKnown RBP28.38■■■□□ 2.13
SMARCB1-202ENST00000344921 USP35Q9P2H5 1018 aa28.38■■■□□ 2.13
SMARCB1-202ENST00000344921 PPM1GO15355 546 aaPredicted RBP28.37■■■□□ 2.13
SMARCB1-202ENST00000344921 IP6K1Q92551 441 aa28.37■■■□□ 2.13
SMARCB1-202ENST00000344921 ABCC6O95255 1503 aa28.36■■■□□ 2.13
SMARCB1-202ENST00000344921 TOM1L2Q6ZVM7 507 aa28.35■■■□□ 2.13
SMARCB1-202ENST00000344921 ZNF316A6NFI3 1004 aaPredicted RBP28.35■■■□□ 2.13
SMARCB1-202ENST00000344921 HOXC9P31274 260 aa28.35■■■□□ 2.13
SMARCB1-202ENST00000344921 SPATA31A5Q5VU36 1347 aa28.34■■■□□ 2.13
SMARCB1-202ENST00000344921 SPATA31A7Q8IWB4 1347 aa28.34■■■□□ 2.13
SMARCB1-202ENST00000344921 EMILIN1Q9Y6C2 1016 aa28.34■■■□□ 2.13
SMARCB1-202ENST00000344921 MAP2P11137 1827 aaKnown RBP28.33■■■□□ 2.13
SMARCB1-202ENST00000344921 GLI3P10071 1580 aa28.33■■■□□ 2.13
SMARCB1-202ENST00000344921 LTV1Q96GA3 475 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 WDR17Q8IZU2 1322 aa28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 BLMP54132 1417 aaPredicted RBP28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 A0A0G2JS52 829 aa28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 MYT1Q01538 1121 aa28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 ANKRD24Q8TF21 1146 aa28.32■■■□□ 2.12
SMARCB1-202ENST00000344921 SPATA31A1Q5TZJ5 1347 aa28.31■■■□□ 2.12
SMARCB1-202ENST00000344921 RTL1A6NKG5 1358 aa28.31■■■□□ 2.12
SMARCB1-202ENST00000344921 CRB1P82279 1406 aa28.3■■■□□ 2.12
SMARCB1-202ENST00000344921 FAM98CQ17RN3 349 aaKnown RBP28.3■■■□□ 2.12
SMARCB1-202ENST00000344921 POLKQ9UBT6 870 aa28.3■■■□□ 2.12
SMARCB1-202ENST00000344921 ERBB3P21860 1342 aa28.3■■■□□ 2.12
SMARCB1-202ENST00000344921 NPC1L1Q9UHC9 1359 aa28.3■■■□□ 2.12
SMARCB1-202ENST00000344921 FLT4P35916 1363 aa28.29■■■□□ 2.12
SMARCB1-202ENST00000344921 KIF24Q5T7B8 1368 aa28.28■■■□□ 2.12
SMARCB1-202ENST00000344921 CDK12Q9NYV4 1490 aaPredicted RBP28.28■■■□□ 2.12
SMARCB1-202ENST00000344921 HSP90AB2PQ58FF8 381 aa28.27■■■□□ 2.12
SMARCB1-202ENST00000344921 TCP11L2Q8N4U5 519 aa28.27■■■□□ 2.12
SMARCB1-202ENST00000344921 NLRP2Q9NX02 1062 aa28.27■■■□□ 2.12
SMARCB1-202ENST00000344921 RGS12O14924 1447 aa28.27■■■□□ 2.12
SMARCB1-202ENST00000344921 PEAK1Q9H792 1746 aa28.26■■■□□ 2.11
SMARCB1-202ENST00000344921 THRAP3Q9Y2W1 955 aaKnown RBP28.24■■■□□ 2.11
SMARCB1-202ENST00000344921 SMG6Q86US8 1419 aaKnown RBP28.24■■■□□ 2.11
SMARCB1-202ENST00000344921 SEPT12Q8IYM1 358 aa28.23■■■□□ 2.11
SMARCB1-202ENST00000344921 CARD10Q9BWT7 1032 aa28.23■■■□□ 2.11
SMARCB1-202ENST00000344921 INSRP06213 1382 aa28.23■■■□□ 2.11
SMARCB1-202ENST00000344921 ONECUT3O60422 494 aaPredicted RBP28.21■■■□□ 2.11
SMARCB1-202ENST00000344921 BARGINQ6ZT62 677 aa28.21■■■□□ 2.11
SMARCB1-202ENST00000344921 FAM208AQ9UK61 1670 aaKnown RBP28.18■■■□□ 2.1
SMARCB1-202ENST00000344921 MTHFSP49914 203 aa28.18■■■□□ 2.1
SMARCB1-202ENST00000344921 RGPD2P0DJD1 1756 aa28.14■■■□□ 2.1
SMARCB1-202ENST00000344921 NBPF6Q5VWK0 638 aa28.14■■■□□ 2.1
SMARCB1-202ENST00000344921 NBPF4Q96M43 638 aa28.14■■■□□ 2.1
SMARCB1-202ENST00000344921 THSD7AQ9UPZ6 1657 aa28.13■■■□□ 2.09
SMARCB1-202ENST00000344921 CDCA7Q9BWT1 371 aaPredicted RBP28.12■■■□□ 2.09
SMARCB1-202ENST00000344921 BRWD3Q6RI45 1802 aa28.12■■■□□ 2.09
SMARCB1-202ENST00000344921 EIF4A2Q14240 407 aaKnown RBP28.12■■■□□ 2.09
SMARCB1-202ENST00000344921 KRT27Q7Z3Y8 459 aa28.12■■■□□ 2.09
SMARCB1-202ENST00000344921 USHBP1Q8N6Y0 703 aa28.12■■■□□ 2.09
SMARCB1-202ENST00000344921 IL2RBP14784 551 aa28.09■■■□□ 2.09
SMARCB1-202ENST00000344921 PDE3BQ13370 1112 aa28.09■■■□□ 2.09
SMARCB1-202ENST00000344921 DDB1Q16531 1140 aa28.09■■■□□ 2.09
SMARCB1-202ENST00000344921 PPP2R1AP30153 589 aa28.08■■■□□ 2.09
SMARCB1-202ENST00000344921 WNK3Q9BYP7 1800 aa28.08■■■□□ 2.08
SMARCB1-202ENST00000344921 PARD3Q8TEW0 1356 aa28.07■■■□□ 2.08
SMARCB1-202ENST00000344921 EYA1Q99502 592 aa28.06■■■□□ 2.08
SMARCB1-202ENST00000344921 PARP4Q9UKK3 1724 aaKnown RBP28.05■■■□□ 2.08
SMARCB1-202ENST00000344921 EXOC5O00471 708 aa28.05■■■□□ 2.08
SMARCB1-202ENST00000344921 RALBP1Q15311 655 aa28.05■■■□□ 2.08
SMARCB1-202ENST00000344921 DISP2A7MBM2 1401 aa28.05■■■□□ 2.08
SMARCB1-202ENST00000344921 RAPGEF4Q8WZA2 1011 aa28.04■■■□□ 2.08
SMARCB1-202ENST00000344921 CFAP53Q96M91 514 aa28.04■■■□□ 2.08
SMARCB1-202ENST00000344921 FAM182BQ5T319 152 aa28.04■■■□□ 2.08
SMARCB1-202ENST00000344921 DIAPH1O60610 1272 aaKnown RBP28.02■■■□□ 2.08
SMARCB1-202ENST00000344921 LRRC37A3O60309 1634 aa28.02■■■□□ 2.08
SMARCB1-202ENST00000344921 IL13P35225 146 aa28.01■■■□□ 2.07
SMARCB1-202ENST00000344921 SOCS7O14512 581 aa28■■■□□ 2.07
SMARCB1-202ENST00000344921 TATP17735 454 aaPredicted RBP28■■■□□ 2.07
SMARCB1-202ENST00000344921 IGSF1Q8N6C5 1336 aa27.98■■■□□ 2.07
SMARCB1-202ENST00000344921 MEGF6O75095 1541 aa27.97■■■□□ 2.07
SMARCB1-202ENST00000344921 EP400Q96L91 3159 aa27.97■■■□□ 2.07
SMARCB1-202ENST00000344921 TNS2Q63HR2 1409 aa27.96■■■□□ 2.07
SMARCB1-202ENST00000344921 PRKRIP1Q9H875 184 aaPredicted RBP27.95■■■□□ 2.07
SMARCB1-202ENST00000344921 U2SURPO15042 1029 aaKnown RBP27.95■■■□□ 2.06
SMARCB1-202ENST00000344921 ZCRB1Q8TBF4 217 aaKnown RBP27.95■■■□□ 2.06
SMARCB1-202ENST00000344921 SULT6B1Q6IMI4 303 aa27.94■■■□□ 2.06
SMARCB1-202ENST00000344921 FAM196AQ6ZSG2 479 aa27.94■■■□□ 2.06
SMARCB1-202ENST00000344921 DDX54Q8TDD1 881 aaKnown RBP27.94■■■□□ 2.06
SMARCB1-202ENST00000344921 MYBBP1AQ9BQG0 1328 aaKnown RBP27.94■■■□□ 2.06
SMARCB1-202ENST00000344921 NCAPD2Q15021 1401 aa27.93■■■□□ 2.06
SMARCB1-202ENST00000344921 MARCH10Q8NA82 808 aaPredicted RBP27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms