RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 RGS17Q9UGC6 210 aaPredicted RBP16.12■□□□□ 0.17
SPTLC1-202ENST00000337841 EMILIN1Q9Y6C2 1016 aa16.12■□□□□ 0.17
SPTLC1-202ENST00000337841 SLIT2O94813 1529 aa16.11■□□□□ 0.17
SPTLC1-202ENST00000337841 RALBP1Q15311 655 aa16.11■□□□□ 0.17
SPTLC1-202ENST00000337841 VPS72Q15906 364 aa16.11■□□□□ 0.17
SPTLC1-202ENST00000337841 KIF24Q5T7B8 1368 aa16.11■□□□□ 0.17
SPTLC1-202ENST00000337841 BCL9LQ86UU0 1499 aa16.1■□□□□ 0.17
SPTLC1-202ENST00000337841 NFAT5O94916 1531 aa16.1■□□□□ 0.17
SPTLC1-202ENST00000337841 NCBP3Q53F19 620 aaKnown RBP16.1■□□□□ 0.17
SPTLC1-202ENST00000337841 PHRF1Q9P1Y6 1649 aaKnown RBP16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 RXRBP28702 533 aa16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 MTHFSP49914 203 aa16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 RBM6P78332 1123 aaKnown RBP16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 HSP90AB2PQ58FF8 381 aa16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 TOM1L2Q6ZVM7 507 aa16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 ANKRD24Q8TF21 1146 aa16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 LTV1Q96GA3 475 aaPredicted RBP16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 GJD4Q96KN9 370 aaPredicted RBP16.09■□□□□ 0.17
SPTLC1-202ENST00000337841 USP54Q70EL1 1684 aa16.08■□□□□ 0.17
SPTLC1-202ENST00000337841 LARP1Q6PKG0 1096 aaKnown RBP16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 POTEAQ6S8J7 498 aa16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 RTL1A6NKG5 1358 aa16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 FLT4P35916 1363 aa16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 CRYBG1Q9Y4K1 1723 aa16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 COL14A1Q05707 1796 aaKnown RBP16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 KIF20BQ96Q89 1820 aa16.08■□□□□ 0.16
SPTLC1-202ENST00000337841 PPP2R1AP30153 589 aa16.07■□□□□ 0.16
SPTLC1-202ENST00000337841 NLRP2Q9NX02 1062 aa16.07■□□□□ 0.16
SPTLC1-202ENST00000337841 WDR17Q8IZU2 1322 aa16.07■□□□□ 0.16
SPTLC1-202ENST00000337841 BLMP54132 1417 aaPredicted RBP16.07■□□□□ 0.16
SPTLC1-202ENST00000337841 ABCA3Q99758 1704 aa16.06■□□□□ 0.16
SPTLC1-202ENST00000337841 CAMTA1Q9Y6Y1 1673 aa16.06■□□□□ 0.16
SPTLC1-202ENST00000337841 INSRP06213 1382 aa16.06■□□□□ 0.16
SPTLC1-202ENST00000337841 CFAP53Q96M91 514 aa16.06■□□□□ 0.16
SPTLC1-202ENST00000337841 ERBB3P21860 1342 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 SPATA31A5Q5VU36 1347 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 SPATA31A7Q8IWB4 1347 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 ANP32CO43423 234 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 CARD10Q9BWT7 1032 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 USP35Q9P2H5 1018 aa16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 MARF1Q9Y4F3 1742 aaKnown RBP16.05■□□□□ 0.16
SPTLC1-202ENST00000337841 ATRNO75882 1429 aa16.04■□□□□ 0.16
SPTLC1-202ENST00000337841 SPATA31A1Q5TZJ5 1347 aa16.04■□□□□ 0.16
SPTLC1-202ENST00000337841 TCP11L2Q8N4U5 519 aa16.04■□□□□ 0.16
SPTLC1-202ENST00000337841 CNKSR2Q8WXI2 1034 aa16.04■□□□□ 0.16
SPTLC1-202ENST00000337841 THRAP3Q9Y2W1 955 aaKnown RBP16.04■□□□□ 0.16
SPTLC1-202ENST00000337841 PARD3Q8TEW0 1356 aa16.03■□□□□ 0.16
SPTLC1-202ENST00000337841 PRKRIP1Q9H875 184 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1-202ENST00000337841 ABCC6O95255 1503 aa16.03■□□□□ 0.16
SPTLC1-202ENST00000337841 COL5A2P05997 1499 aaPredicted RBP16.03■□□□□ 0.16
SPTLC1-202ENST00000337841 SMG6Q86US8 1419 aaKnown RBP16.02■□□□□ 0.16
SPTLC1-202ENST00000337841 CRB1P82279 1406 aa16.02■□□□□ 0.15
SPTLC1-202ENST00000337841 ONECUT3O60422 494 aaPredicted RBP16.01■□□□□ 0.15
SPTLC1-202ENST00000337841 DIAPH1O60610 1272 aaKnown RBP16.01■□□□□ 0.15
SPTLC1-202ENST00000337841 EIF4A2Q14240 407 aaKnown RBP16.01■□□□□ 0.15
SPTLC1-202ENST00000337841 BARGINQ6ZT62 677 aa16.01■□□□□ 0.15
SPTLC1-202ENST00000337841 MYBBP1AQ9BQG0 1328 aaKnown RBP16■□□□□ 0.15
SPTLC1-202ENST00000337841 A0A0G2JS52 829 aa16■□□□□ 0.15
SPTLC1-202ENST00000337841 MYT1Q01538 1121 aa16■□□□□ 0.15
SPTLC1-202ENST00000337841 FAM98CQ17RN3 349 aaKnown RBP16■□□□□ 0.15
SPTLC1-202ENST00000337841 NBPF6Q5VWK0 638 aa16■□□□□ 0.15
SPTLC1-202ENST00000337841 NBPF4Q96M43 638 aa16■□□□□ 0.15
SPTLC1-202ENST00000337841 CDCA7Q9BWT1 371 aaPredicted RBP16■□□□□ 0.15
SPTLC1-202ENST00000337841 NUDCQ9Y266 331 aa16■□□□□ 0.15
SPTLC1-202ENST00000337841 NWD2Q9ULI1 1742 aa15.99■□□□□ 0.15
SPTLC1-202ENST00000337841 ANKRD26Q9UPS8 1709 aa15.99■□□□□ 0.15
SPTLC1-202ENST00000337841 LMO7Q8WWI1 1683 aa15.99■□□□□ 0.15
SPTLC1-202ENST00000337841 COL18A1P39060 1754 aa15.99■□□□□ 0.15
SPTLC1-202ENST00000337841 IL13P35225 146 aa15.98■□□□□ 0.15
SPTLC1-202ENST00000337841 EYA1Q99502 592 aa15.98■□□□□ 0.15
SPTLC1-202ENST00000337841 SEPT12Q8IYM1 358 aa15.97■□□□□ 0.15
SPTLC1-202ENST00000337841 PLCH1Q4KWH8 1693 aa15.97■□□□□ 0.15
SPTLC1-202ENST00000337841 CDK12Q9NYV4 1490 aaPredicted RBP15.97■□□□□ 0.15
SPTLC1-202ENST00000337841 IL2RBP14784 551 aa15.96■□□□□ 0.15
SPTLC1-202ENST00000337841 RAPGEF4Q8WZA2 1011 aa15.96■□□□□ 0.15
SPTLC1-202ENST00000337841 LTN1O94822 1766 aa15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 EXOC5O00471 708 aa15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 U2SURPO15042 1029 aaKnown RBP15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 DIEXFQ68CQ4 756 aaKnown RBP15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 USHBP1Q8N6Y0 703 aa15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 MAP2P11137 1827 aaKnown RBP15.95■□□□□ 0.14
SPTLC1-202ENST00000337841 TATP17735 454 aaPredicted RBP15.94■□□□□ 0.14
SPTLC1-202ENST00000337841 PDE3BQ13370 1112 aa15.94■□□□□ 0.14
SPTLC1-202ENST00000337841 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.94■□□□□ 0.14
SPTLC1-202ENST00000337841 NPM3O75607 178 aaKnown RBP15.93■□□□□ 0.14
SPTLC1-202ENST00000337841 DDB1Q16531 1140 aa15.93■□□□□ 0.14
SPTLC1-202ENST00000337841 NRAPQ86VF7 1730 aa15.93■□□□□ 0.14
SPTLC1-202ENST00000337841 PEAK1Q9H792 1746 aa15.93■□□□□ 0.14
SPTLC1-202ENST00000337841 SULT6B1Q6IMI4 303 aa15.92■□□□□ 0.14
SPTLC1-202ENST00000337841 IGSF1Q8N6C5 1336 aa15.92■□□□□ 0.14
SPTLC1-202ENST00000337841 U2AF1L5P0DN76 240 aaPredicted RBP15.91■□□□□ 0.14
SPTLC1-202ENST00000337841 U2AF1Q01081 240 aaKnown RBP eCLIP15.91■□□□□ 0.14
SPTLC1-202ENST00000337841 KRT27Q7Z3Y8 459 aa15.9■□□□□ 0.14
SPTLC1-202ENST00000337841 ZCRB1Q8TBF4 217 aaKnown RBP15.9■□□□□ 0.14
SPTLC1-202ENST00000337841 GLI3P10071 1580 aa15.89■□□□□ 0.13
SPTLC1-202ENST00000337841 HMOX1P09601 288 aa15.89■□□□□ 0.13
SPTLC1-202ENST00000337841 PNNQ9H307 717 aaKnown RBP15.89■□□□□ 0.13
SPTLC1-202ENST00000337841 SPG7Q9UQ90 795 aa15.89■□□□□ 0.13
SPTLC1-202ENST00000337841 RGPD5Q99666 1765 aa15.89■□□□□ 0.13
SPTLC1-202ENST00000337841 FCHSD2O94868 740 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms