RNA–Protein interactions for RNA: ENST00000327304.9

EXOSC3-201, Transcript of exosome component 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene EXOSC3, Length 1,806 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-201ENST00000327304 HAP1P54257 671 aaPredicted RBP24.97■■□□□ 1.59
EXOSC3-201ENST00000327304 WDR43Q15061 677 aaKnown RBP eCLIP24.97■■□□□ 1.59
EXOSC3-201ENST00000327304 KIAA0232Q92628 1395 aa24.97■■□□□ 1.59
EXOSC3-201ENST00000327304 IP6K1Q92551 441 aa24.96■■□□□ 1.59
EXOSC3-201ENST00000327304 CPDO75976 1380 aa24.96■■□□□ 1.59
EXOSC3-201ENST00000327304 HSPA1LP34931 641 aa24.96■■□□□ 1.59
EXOSC3-201ENST00000327304 IL13P35225 146 aa24.95■■□□□ 1.58
EXOSC3-201ENST00000327304 EIF4A2Q14240 407 aaKnown RBP24.95■■□□□ 1.58
EXOSC3-201ENST00000327304 ADAMTS8Q9UP79 889 aa24.95■■□□□ 1.58
EXOSC3-201ENST00000327304 COL18A1P39060 1754 aa24.93■■□□□ 1.58
EXOSC3-201ENST00000327304 CHRNA2Q15822 529 aa24.93■■□□□ 1.58
EXOSC3-201ENST00000327304 U2SURPO15042 1029 aaKnown RBP24.92■■□□□ 1.58
EXOSC3-201ENST00000327304 NUDCQ9Y266 331 aa24.92■■□□□ 1.58
EXOSC3-201ENST00000327304 JCADQ9P266 1359 aa24.92■■□□□ 1.58
EXOSC3-201ENST00000327304 AXIN2Q9Y2T1 843 aa24.91■■□□□ 1.58
EXOSC3-201ENST00000327304 PRDM11Q9NQV5 511 aa24.9■■□□□ 1.58
EXOSC3-201ENST00000327304 RGPD5Q99666 1765 aa24.9■■□□□ 1.58
EXOSC3-201ENST00000327304 U2AF1L5P0DN76 240 aaPredicted RBP24.89■■□□□ 1.58
EXOSC3-201ENST00000327304 U2AF1Q01081 240 aaKnown RBP eCLIP24.89■■□□□ 1.58
EXOSC3-201ENST00000327304 LTV1Q96GA3 475 aaPredicted RBP24.89■■□□□ 1.58
EXOSC3-201ENST00000327304 BLMP54132 1417 aaPredicted RBP24.89■■□□□ 1.58
EXOSC3-201ENST00000327304 ABCC6O95255 1503 aa24.89■■□□□ 1.57
EXOSC3-201ENST00000327304 RGPD1P0DJD0 1748 aa24.87■■□□□ 1.57
EXOSC3-201ENST00000327304 LMO7Q8WWI1 1683 aa24.87■■□□□ 1.57
EXOSC3-201ENST00000327304 NUTM2BA6NNL0 878 aaPredicted RBP24.86■■□□□ 1.57
EXOSC3-201ENST00000327304 NUTM2EB1AL46 878 aaPredicted RBP24.86■■□□□ 1.57
EXOSC3-201ENST00000327304 NUTM2AQ8IVF1 878 aaPredicted RBP24.86■■□□□ 1.57
EXOSC3-201ENST00000327304 FAM83GA6ND36 823 aa24.84■■□□□ 1.57
EXOSC3-201ENST00000327304 ANKRD24Q8TF21 1146 aa24.84■■□□□ 1.57
EXOSC3-201ENST00000327304 CCDC146Q8IYE0 955 aa24.84■■□□□ 1.57
EXOSC3-201ENST00000327304 CAMTA1Q9Y6Y1 1673 aa24.83■■□□□ 1.57
EXOSC3-201ENST00000327304 ADAMTS2O95450 1211 aa24.83■■□□□ 1.57
EXOSC3-201ENST00000327304 HMOX1P09601 288 aa24.82■■□□□ 1.56
EXOSC3-201ENST00000327304 EYA1Q99502 592 aa24.82■■□□□ 1.56
EXOSC3-201ENST00000327304 ERBB3P21860 1342 aa24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 COL14A1Q05707 1796 aaKnown RBP24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 SENP3-EIF4A1A0A087X0R7 540 aa24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 AEBP1Q8IUX7 1158 aa24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 IGSF1Q8N6C5 1336 aa24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 RGPD2P0DJD1 1756 aa24.81■■□□□ 1.56
EXOSC3-201ENST00000327304 RSPH6AQ9H0K4 717 aa24.79■■□□□ 1.56
EXOSC3-201ENST00000327304 SULT6B1Q6IMI4 303 aa24.79■■□□□ 1.56
EXOSC3-201ENST00000327304 SPATA31A6Q5VVP1 1343 aa24.79■■□□□ 1.56
EXOSC3-201ENST00000327304 COL5A2P05997 1499 aaPredicted RBP24.78■■□□□ 1.56
EXOSC3-201ENST00000327304 LRP6O75581 1613 aa24.78■■□□□ 1.56
EXOSC3-201ENST00000327304 NBPF6Q5VWK0 638 aa24.78■■□□□ 1.56
EXOSC3-201ENST00000327304 NBPF4Q96M43 638 aa24.78■■□□□ 1.56
EXOSC3-201ENST00000327304 FCHSD2O94868 740 aa24.77■■□□□ 1.56
EXOSC3-201ENST00000327304 USHBP1Q8N6Y0 703 aa24.77■■□□□ 1.56
EXOSC3-201ENST00000327304 PRKAR2BP31323 418 aa24.76■■□□□ 1.55
EXOSC3-201ENST00000327304 RUNDC1Q96C34 613 aa24.76■■□□□ 1.55
EXOSC3-201ENST00000327304 PLEKHF1Q96S99 279 aa24.76■■□□□ 1.55
EXOSC3-201ENST00000327304 PLCH1Q4KWH8 1693 aa24.76■■□□□ 1.55
EXOSC3-201ENST00000327304 KDRP35968 1356 aa24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 BTG4Q9NY30 223 aa24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 SUPT16HQ9Y5B9 1047 aaKnown RBP24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 NEFLP07196 543 aa24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 CSB-PGBD3P0DP91 1061 aa24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 FBXO41Q8TF61 875 aa24.75■■□□□ 1.55
EXOSC3-201ENST00000327304 FAM208AQ9UK61 1670 aaKnown RBP24.74■■□□□ 1.55
EXOSC3-201ENST00000327304 NCAPD2Q15021 1401 aa24.73■■□□□ 1.55
EXOSC3-201ENST00000327304 PDE3BQ13370 1112 aa24.73■■□□□ 1.55
EXOSC3-201ENST00000327304 WDR17Q8IZU2 1322 aa24.73■■□□□ 1.55
EXOSC3-201ENST00000327304 APAF1O14727 1248 aa24.72■■□□□ 1.55
EXOSC3-201ENST00000327304 STRN4Q9NRL3 753 aa24.72■■□□□ 1.55
EXOSC3-201ENST00000327304 NLRP2Q9NX02 1062 aa24.72■■□□□ 1.55
EXOSC3-201ENST00000327304 PNNQ9H307 717 aaKnown RBP24.71■■□□□ 1.55
EXOSC3-201ENST00000327304 PHACTR3Q96KR7 559 aa24.7■■□□□ 1.55
EXOSC3-201ENST00000327304 MAPK8IP3Q9UPT6 1336 aa24.7■■□□□ 1.54
EXOSC3-201ENST00000327304 EVA1CP58658 441 aa24.7■■□□□ 1.54
EXOSC3-201ENST00000327304 TCP11L2Q8N4U5 519 aa24.7■■□□□ 1.54
EXOSC3-201ENST00000327304 LARP1Q6PKG0 1096 aaKnown RBP24.69■■□□□ 1.54
EXOSC3-201ENST00000327304 NRAPQ86VF7 1730 aa24.69■■□□□ 1.54
EXOSC3-201ENST00000327304 SLIT2O94813 1529 aa24.68■■□□□ 1.54
EXOSC3-201ENST00000327304 C8orf37Q96NL8 207 aa24.68■■□□□ 1.54
EXOSC3-201ENST00000327304 SALL2Q9Y467 1007 aaPredicted RBP24.68■■□□□ 1.54
EXOSC3-201ENST00000327304 TOM1L2Q6ZVM7 507 aa24.68■■□□□ 1.54
EXOSC3-201ENST00000327304 FKBP8Q14318 412 aa24.67■■□□□ 1.54
EXOSC3-201ENST00000327304 RRP7AQ9Y3A4 280 aaKnown RBP24.67■■□□□ 1.54
EXOSC3-201ENST00000327304 NWD2Q9ULI1 1742 aa24.67■■□□□ 1.54
EXOSC3-201ENST00000327304 NGLY1Q96IV0 654 aa24.65■■□□□ 1.54
EXOSC3-201ENST00000327304 CRB1P82279 1406 aa24.64■■□□□ 1.54
EXOSC3-201ENST00000327304 NEFMP07197 916 aa24.64■■□□□ 1.54
EXOSC3-201ENST00000327304 NEUROD2Q15784 382 aa24.63■■□□□ 1.53
EXOSC3-201ENST00000327304 MEX3CQ5U5Q3 659 aaKnown RBP24.63■■□□□ 1.53
EXOSC3-201ENST00000327304 CARD10Q9BWT7 1032 aa24.63■■□□□ 1.53
EXOSC3-201ENST00000327304 TMPOP42166 694 aaKnown RBP24.63■■□□□ 1.53
EXOSC3-201ENST00000327304 NGEFQ8N5V2 710 aa24.62■■□□□ 1.53
EXOSC3-201ENST00000327304 NFE2L2Q16236 605 aa24.61■■□□□ 1.53
EXOSC3-201ENST00000327304 MEGF6O75095 1541 aa24.61■■□□□ 1.53
EXOSC3-201ENST00000327304 FNBP4Q8N3X1 1017 aaPredicted RBP24.61■■□□□ 1.53
EXOSC3-201ENST00000327304 BCL9LQ86UU0 1499 aa24.6■■□□□ 1.53
EXOSC3-201ENST00000327304 MTHFSDQ2M296 383 aaKnown RBP24.58■■□□□ 1.53
EXOSC3-201ENST00000327304 UNC5CLQ8IV45 518 aa24.58■■□□□ 1.53
EXOSC3-201ENST00000327304 RAPGEF4Q8WZA2 1011 aa24.58■■□□□ 1.53
EXOSC3-201ENST00000327304 USP35Q9P2H5 1018 aa24.58■■□□□ 1.53
EXOSC3-201ENST00000327304 RIPK4P57078 832 aa24.58■■□□□ 1.53
EXOSC3-201ENST00000327304 ERICH6BQ5W0A0 696 aa24.57■■□□□ 1.52
EXOSC3-201ENST00000327304 DLG5Q8TDM6 1919 aa24.56■■□□□ 1.52
EXOSC3-201ENST00000327304 ZNF521Q96K83 1311 aa24.56■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms