RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 VGFO15240 615 aaPredicted RBP13.41□□□□□ -0.26
PTPN4-201ENST00000263708 NACAP1Q9BZK3 213 aa13.41□□□□□ -0.26
PTPN4-201ENST00000263708 CA8P35219 290 aa13.41□□□□□ -0.26
PTPN4-201ENST00000263708 ST20-MTHFSA0A0A6YYL1 179 aa13.41□□□□□ -0.26
PTPN4-201ENST00000263708 PPP4R3AQ6IN85 833 aa13.4□□□□□ -0.26
PTPN4-201ENST00000263708 PRPF40AO75400 957 aaKnown RBP13.4□□□□□ -0.26
PTPN4-201ENST00000263708 CTNNBL1Q8WYA6 563 aaPredicted RBP13.4□□□□□ -0.26
PTPN4-201ENST00000263708 SPINK5Q9NQ38 1064 aaPredicted RBP13.4□□□□□ -0.26
PTPN4-201ENST00000263708 FMN1Q68DA7 1419 aa13.4□□□□□ -0.26
PTPN4-201ENST00000263708 L3MBTL2Q969R5 705 aa13.4□□□□□ -0.26
PTPN4-201ENST00000263708 CETN2P41208 172 aa13.4□□□□□ -0.26
PTPN4-201ENST00000263708 NOL7Q9UMY1 257 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC57Q2TAC2 916 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 SURF6O75683 361 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 USP8P40818 1118 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 GNAI1P63096 354 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 MRPS9P82933 396 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 ABCC8Q09428 1581 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 PABPN1LA6NDY0 278 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 MAP4K4O95819 1239 aaPredicted RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 SIL1Q9H173 461 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 NACADO15069 1562 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 SMC1AQ14683 1233 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 EIF5P55010 431 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 ZNF397Q8NF99 534 aaPredicted RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 SMG6Q86US8 1419 aaKnown RBP13.39□□□□□ -0.27
PTPN4-201ENST00000263708 CEP57L1Q8IYX8 460 aa13.39□□□□□ -0.27
PTPN4-201ENST00000263708 NUTM2BA6NNL0 878 aaPredicted RBP13.38□□□□□ -0.27
PTPN4-201ENST00000263708 NUTM2EB1AL46 878 aaPredicted RBP13.38□□□□□ -0.27
PTPN4-201ENST00000263708 CBFA2T2O43439 604 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 NUTM2AQ8IVF1 878 aaPredicted RBP13.38□□□□□ -0.27
PTPN4-201ENST00000263708 SERPINA10Q9UK55 444 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 GSTTP1A0A1W2PQM5 241 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 MPNDQ8N594 471 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC150Q8NCX0 1101 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 PPP1R12BO60237 982 aaPredicted RBP13.38□□□□□ -0.27
PTPN4-201ENST00000263708 NEK4P51957 841 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 MPHOSPH8Q99549 860 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC192P0DO97 292 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 RSPH4AQ5TD94 716 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 TNIP1Q15025 636 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 FEZ1Q99689 392 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 MACROD2A1Z1Q3 448 aa13.38□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC18Q5T9S5 1454 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 TTLL12Q14166 644 aaPredicted RBP13.37□□□□□ -0.27
PTPN4-201ENST00000263708 SPATA24Q86W54 205 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 RUNDC1Q96C34 613 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 TDO2P48775 406 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 MRE11P49959 708 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 FKBP4Q02790 459 aaKnown RBP eCLIP13.37□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC30Q5VVM6 783 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC178Q5BJE1 867 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 CCDC148Q8NFR7 591 aa13.37□□□□□ -0.27
PTPN4-201ENST00000263708 ZWINTO95229 277 aa13.36□□□□□ -0.27
PTPN4-201ENST00000263708 HOOK3Q86VS8 718 aa13.36□□□□□ -0.27
PTPN4-201ENST00000263708 PANK1Q8TE04 598 aa13.36□□□□□ -0.27
PTPN4-201ENST00000263708 WDR78Q5VTH9 848 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 MBD3O95983 291 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 TMCO3Q6UWJ1 677 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 UBA5Q9GZZ9 404 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 FERMT2Q96AC1 680 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 IFFO1Q0D2I5 559 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 ANKRD18BA2A2Z9 1011 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 WDHD1O75717 1129 aaPredicted RBP13.35□□□□□ -0.27
PTPN4-201ENST00000263708 UBAC1Q9BSL1 405 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 TNNT1P13805 278 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 MIA2Q96PC5 1412 aa13.35□□□□□ -0.27
PTPN4-201ENST00000263708 CTNNA2P26232 953 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 ABTB2Q8N961 1025 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 SEC63Q9UGP8 760 aaKnown RBP13.34□□□□□ -0.27
PTPN4-201ENST00000263708 SSX2IPQ9Y2D8 614 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 TRAK2O60296 914 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 FERP16591 822 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 CYP46A1Q9Y6A2 500 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 TMCO5BA8MYB1 307 aa13.34□□□□□ -0.27
PTPN4-201ENST00000263708 DHX8Q14562 1220 aaKnown RBP13.34□□□□□ -0.27
PTPN4-201ENST00000263708 GIGYF2Q6Y7W6 1299 aaKnown RBP13.34□□□□□ -0.27
PTPN4-201ENST00000263708 LARP1Q6PKG0 1096 aaKnown RBP13.34□□□□□ -0.27
PTPN4-201ENST00000263708 MYL6BP14649 208 aa13.33□□□□□ -0.27
PTPN4-201ENST00000263708 LIG1P18858 919 aa13.33□□□□□ -0.27
PTPN4-201ENST00000263708 DNA2P51530 1060 aa13.33□□□□□ -0.28
PTPN4-201ENST00000263708 CFAP57Q96MR6 1250 aa13.33□□□□□ -0.28
PTPN4-201ENST00000263708 C1orf115Q9H7X2 142 aa13.33□□□□□ -0.28
PTPN4-201ENST00000263708 ANKRD1Q15327 319 aa13.33□□□□□ -0.28
PTPN4-201ENST00000263708 CDKL5O76039 1030 aa13.33□□□□□ -0.28
PTPN4-201ENST00000263708 SHTN1A0MZ66 631 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 CRACR2AQ9BSW2 395 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 CABP4P57796 275 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 TMOD2Q9NZR1 351 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 SPA17Q15506 151 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 DDX54Q8TDD1 881 aaKnown RBP13.32□□□□□ -0.28
PTPN4-201ENST00000263708 ARHGAP29Q52LW3 1261 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 BICDL1Q6ZP65 573 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.32□□□□□ -0.28
PTPN4-201ENST00000263708 GCOM1H8Y6P7 765 aaPredicted RBP13.32□□□□□ -0.28
PTPN4-201ENST00000263708 MYZAPP0CAP1 466 aa13.32□□□□□ -0.28
PTPN4-201ENST00000263708 ARL1P40616 181 aaPredicted RBP13.32□□□□□ -0.28
PTPN4-201ENST00000263708 USP47Q96K76 1375 aa13.31□□□□□ -0.28
PTPN4-201ENST00000263708 RAI14Q9P0K7 980 aa13.31□□□□□ -0.28
PTPN4-201ENST00000263708 GPRASP1Q5JY77 1395 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms