RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 CNNM1Q9NRU3 951 aa22.8■■□□□ 1.24
UPF1-201ENST00000262803 CABP4P57796 275 aa22.79■■□□□ 1.24
UPF1-201ENST00000262803 SRCIN1Q9C0H9 1055 aa22.79■■□□□ 1.24
UPF1-201ENST00000262803 RBM42Q9BTD8 480 aaKnown RBP22.79■■□□□ 1.24
UPF1-201ENST00000262803 FYB1O15117 783 aa22.79■■□□□ 1.24
UPF1-201ENST00000262803 SDF4Q9BRK5 362 aa22.79■■□□□ 1.24
UPF1-201ENST00000262803 MAGEC2Q9UBF1 373 aaPredicted RBP22.79■■□□□ 1.24
UPF1-201ENST00000262803 SULT6B1Q6IMI4 303 aa22.79■■□□□ 1.24
UPF1-201ENST00000262803 ZNF771Q7L3S4 317 aaPredicted RBP22.78■■□□□ 1.24
UPF1-201ENST00000262803 CDK19Q9BWU1 502 aa22.78■■□□□ 1.24
UPF1-201ENST00000262803 AEBP1Q8IUX7 1158 aa22.78■■□□□ 1.24
UPF1-201ENST00000262803 DACH1Q9UI36 760 aa22.78■■□□□ 1.24
UPF1-201ENST00000262803 KINO60870 393 aaKnown RBP22.77■■□□□ 1.24
UPF1-201ENST00000262803 NESP48681 1621 aa22.77■■□□□ 1.24
UPF1-201ENST00000262803 LUC7LQ9NQ29 371 aaKnown RBP22.77■■□□□ 1.23
UPF1-201ENST00000262803 RTEL1-TNFRSF6BF6WH68 1400 aa22.76■■□□□ 1.23
UPF1-201ENST00000262803 TOPBP1Q92547 1522 aa22.76■■□□□ 1.23
UPF1-201ENST00000262803 POLA1P09884 1462 aaPredicted RBP22.76■■□□□ 1.23
UPF1-201ENST00000262803 TRIM22Q8IYM9 498 aa22.76■■□□□ 1.23
UPF1-201ENST00000262803 HSP90B2PQ58FF3 399 aa22.76■■□□□ 1.23
UPF1-201ENST00000262803 DCTN1Q14203 1278 aa22.75■■□□□ 1.23
UPF1-201ENST00000262803 HDGFL1Q5TGJ6 251 aa22.75■■□□□ 1.23
UPF1-201ENST00000262803 SYCP1Q15431 976 aa22.74■■□□□ 1.23
UPF1-201ENST00000262803 RRP12Q5JTH9 1297 aaKnown RBP22.74■■□□□ 1.23
UPF1-201ENST00000262803 HSP90AB2PQ58FF8 381 aa22.74■■□□□ 1.23
UPF1-201ENST00000262803 SUPT6HQ7KZ85 1726 aaKnown RBP22.74■■□□□ 1.23
UPF1-201ENST00000262803 SLFN5Q08AF3 891 aa22.73■■□□□ 1.23
UPF1-201ENST00000262803 TMEM132AQ24JP5 1023 aa22.73■■□□□ 1.23
UPF1-201ENST00000262803 DNAJC2Q99543 621 aaKnown RBP22.73■■□□□ 1.23
UPF1-201ENST00000262803 CDKL5O76039 1030 aa22.73■■□□□ 1.23
UPF1-201ENST00000262803 CHD1LQ86WJ1 897 aa22.73■■□□□ 1.23
UPF1-201ENST00000262803 FIBPO43427 364 aa22.72■■□□□ 1.23
UPF1-201ENST00000262803 TSPY26PQ9H489 355 aa22.72■■□□□ 1.23
UPF1-201ENST00000262803 STIM1Q13586 685 aa22.72■■□□□ 1.23
UPF1-201ENST00000262803 TOM1L2Q6ZVM7 507 aa22.72■■□□□ 1.23
UPF1-201ENST00000262803 K7ELQ4 463 aaPredicted RBP22.72■■□□□ 1.23
UPF1-201ENST00000262803 CTNNA3Q9UI47 895 aa22.72■■□□□ 1.23
UPF1-201ENST00000262803 ZNF530Q6P9A1 599 aaPredicted RBP22.71■■□□□ 1.23
UPF1-201ENST00000262803 KCNH5Q8NCM2 988 aa22.71■■□□□ 1.23
UPF1-201ENST00000262803 TRIM5Q9C035 493 aa22.71■■□□□ 1.23
UPF1-201ENST00000262803 LRRCC1Q9C099 1032 aa22.71■■□□□ 1.23
UPF1-201ENST00000262803 KRT18P05783 430 aaKnown RBP22.71■■□□□ 1.23
UPF1-201ENST00000262803 NOL7Q9UMY1 257 aaKnown RBP22.71■■□□□ 1.23
UPF1-201ENST00000262803 SAMD1Q6SPF0 538 aaPredicted RBP22.7■■□□□ 1.22
UPF1-201ENST00000262803 SOGA3Q5TF21 947 aa22.69■■□□□ 1.22
UPF1-201ENST00000262803 STRN4Q9NRL3 753 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 CYP46A1Q9Y6A2 500 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 C11orf95C9JLR9 678 aaPredicted RBP22.68■■□□□ 1.22
UPF1-201ENST00000262803 CCDC57Q2TAC2 916 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 STK38Q15208 465 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 ZFYVE27Q5T4F4 411 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 ZNHIT6Q9NWK9 470 aaKnown RBP22.68■■□□□ 1.22
UPF1-201ENST00000262803 MTERF4Q7Z6M4 381 aaKnown RBP22.68■■□□□ 1.22
UPF1-201ENST00000262803 CAGE1Q8TC20 777 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 MPHOSPH8Q99549 860 aa22.68■■□□□ 1.22
UPF1-201ENST00000262803 NOM1Q5C9Z4 860 aaKnown RBP22.67■■□□□ 1.22
UPF1-201ENST00000262803 KRT32Q14532 448 aa22.67■■□□□ 1.22
UPF1-201ENST00000262803 IL27Q8NEV9 243 aa22.67■■□□□ 1.22
UPF1-201ENST00000262803 EPRSP07814 1512 aaKnown RBP22.66■■□□□ 1.22
UPF1-201ENST00000262803 WASF1Q92558 559 aa22.66■■□□□ 1.22
UPF1-201ENST00000262803 CDK13Q14004 1512 aaKnown RBP22.66■■□□□ 1.22
UPF1-201ENST00000262803 FCHSD2O94868 740 aa22.66■■□□□ 1.22
UPF1-201ENST00000262803 CCDC69A6NI79 296 aa22.66■■□□□ 1.22
UPF1-201ENST00000262803 ZSCAN31Q96LW9 406 aaPredicted RBP22.65■■□□□ 1.22
UPF1-201ENST00000262803 ZNF287Q9HBT7 754 aa22.65■■□□□ 1.22
UPF1-201ENST00000262803 ERLIN2O94905 339 aa22.64■■□□□ 1.22
UPF1-201ENST00000262803 DNAI2Q9GZS0 605 aa22.64■■□□□ 1.22
UPF1-201ENST00000262803 NSD3Q9BZ95 1437 aa22.64■■□□□ 1.21
UPF1-201ENST00000262803 TMPOP42166 694 aaKnown RBP22.64■■□□□ 1.21
UPF1-201ENST00000262803 PDILTQ8N807 584 aa22.64■■□□□ 1.21
UPF1-201ENST00000262803 CCDC141Q6ZP82 1450 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 PRDM11Q9NQV5 511 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 KDM4AO75164 1064 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 DESP17661 470 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 BCL11BQ9C0K0 894 aaPredicted RBP22.63■■□□□ 1.21
UPF1-201ENST00000262803 WDR33Q9C0J8 1336 aaKnown RBP22.63■■□□□ 1.21
UPF1-201ENST00000262803 MCM4P33991 863 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 ZNF652Q9Y2D9 606 aa22.63■■□□□ 1.21
UPF1-201ENST00000262803 TMEM57Q8N5G2 664 aa22.62■■□□□ 1.21
UPF1-201ENST00000262803 CIZ1Q9ULV3 898 aaPredicted RBP22.62■■□□□ 1.21
UPF1-201ENST00000262803 BMP2KQ9NSY1 1161 aaPredicted RBP22.62■■□□□ 1.21
UPF1-201ENST00000262803 FMNL2Q96PY5 1086 aa22.62■■□□□ 1.21
UPF1-201ENST00000262803 SNAPC4Q5SXM2 1469 aa22.62■■□□□ 1.21
UPF1-201ENST00000262803 ATP2B1P20020 1258 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 RRS1Q15050 365 aaKnown RBP22.61■■□□□ 1.21
UPF1-201ENST00000262803 ANKRD18AQ8IVF6 992 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 GRPEL1Q9HAV7 217 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 ZRSR2Q15696 482 aaKnown RBP22.61■■□□□ 1.21
UPF1-201ENST00000262803 HMGXB3Q12766 1538 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 MAP7D2Q96T17 732 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 TMOD2Q9NZR1 351 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 STARD3NLO95772 234 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 CEBPZQ03701 1054 aaKnown RBP22.61■■□□□ 1.21
UPF1-201ENST00000262803 NFE2L2Q16236 605 aa22.61■■□□□ 1.21
UPF1-201ENST00000262803 RPAP2Q8IXW5 612 aaPredicted RBP22.61■■□□□ 1.21
UPF1-201ENST00000262803 CBFA2T2O43439 604 aa22.6■■□□□ 1.21
UPF1-201ENST00000262803 CEP126Q9P2H0 1117 aa22.6■■□□□ 1.21
UPF1-201ENST00000262803 IGHMBP2P38935 993 aaKnown RBP22.6■■□□□ 1.21
UPF1-201ENST00000262803 TRIM21P19474 475 aaKnown RBP22.6■■□□□ 1.21
UPF1-201ENST00000262803 SIL1Q9H173 461 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms