RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PDZD7Q9H5P4 517 aa7.66□□□□□ -1.18
NUP54-215ENST00000514313 RANGRFQ9HD47 186 aaPredicted RBP7.66□□□□□ -1.18
NUP54-215ENST00000514313 SPAG4Q9NPE6 437 aa7.66□□□□□ -1.18
NUP54-215ENST00000514313 SH3GLB2Q9NR46 395 aa7.66□□□□□ -1.18
NUP54-215ENST00000514313 MORF4L1Q9UBU8 362 aa7.66□□□□□ -1.18
NUP54-215ENST00000514313 NENFQ9UMX5 172 aa7.66□□□□□ -1.18
NUP54-215ENST00000514313 A0A096LPK6 155 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 TYW5A2RUC4 315 aaKnown RBP7.65□□□□□ -1.18
NUP54-215ENST00000514313 UBE2CO00762 179 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 KIF1CO43896 1103 aaKnown RBP7.65□□□□□ -1.18
NUP54-215ENST00000514313 ATP2C2O75185 946 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 BMP5P22003 454 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 CXCR3P49682 368 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 HSD17B4P51659 736 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 PMS2P54278 862 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 TTC39AQ5SRH9 613 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 GARNL3Q5VVW2 1013 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 HIST2H2BCQ6DN03 193 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 HIST2H2BDQ6DRA6 164 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 ISM2Q6H9L7 571 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 CES5AQ6NT32 575 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 QSOX2Q6ZRP7 698 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 TMC8Q8IU68 726 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 SLC25A41Q8N5S1 370 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 GJC3Q8NFK1 279 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 WIPF2Q8TF74 440 aaPredicted RBP7.65□□□□□ -1.18
NUP54-215ENST00000514313 EME1Q96AY2 570 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 RNF183Q96D59 192 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 SAT2Q96F10 170 aaPredicted RBP7.65□□□□□ -1.18
NUP54-215ENST00000514313 NCAPGQ9BPX3 1015 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 TEX12Q9BXU0 123 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 SETD4Q9NVD3 440 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 RAP2CQ9Y3L5 183 aa7.65□□□□□ -1.18
NUP54-215ENST00000514313 LSM4Q9Y4Z0 139 aaKnown RBP7.65□□□□□ -1.18
NUP54-215ENST00000514313 A0A0U1RQF3 1178 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 MASP2O00187 686 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 SLC25A12O75746 678 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 APOA4P06727 396 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 GLULP15104 373 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 SAT1P21673 171 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 SHMT1P34896 483 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 GPR12P47775 334 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 CLCN3P51790 818 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 GALCP54803 685 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 MFAP4P55083 255 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 KRTAP10-2P60368 255 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 DRAP1Q14919 205 aaPredicted RBP7.64□□□□□ -1.19
NUP54-215ENST00000514313 PCLAFQ15004 111 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 NTRK2Q16620 822 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 TCTN1Q2MV58 587 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 MIDNQ504T8 468 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 FAM57BQ71RH2 274 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 KDELC2Q7Z4H8 507 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 IL17RCQ8NAC3 791 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 UBE2Q2Q8WVN8 375 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 ABHD1Q96SE0 405 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 SH2D3AQ9BRG2 576 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 C1QTNF5Q9BXJ0 243 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 BPIFA1Q9NP55 256 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 ZCCHC17Q9NP64 241 aaKnown RBP7.64□□□□□ -1.19
NUP54-215ENST00000514313 PNRC2Q9NPJ4 139 aaKnown RBP7.64□□□□□ -1.19
NUP54-215ENST00000514313 PDGFCQ9NRA1 345 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 PAPOLBQ9NRJ5 636 aaKnown RBP7.64□□□□□ -1.19
NUP54-215ENST00000514313 OGFRQ9NZT2 677 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 SEL1LQ9UBV2 794 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 PTRH2Q9Y3E5 179 aaKnown RBP7.64□□□□□ -1.19
NUP54-215ENST00000514313 A3GALT2U3KPV4 340 aa7.64□□□□□ -1.19
NUP54-215ENST00000514313 UTYO14607 1347 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 FAM237AA0A1B0GTK4 181 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 C17orf102A2RUQ5 167 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 H7C0S8 307 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 HCRTR2O43614 444 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 KLK8O60259 260 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 TOP3BO95985 862 aaKnown RBP7.63□□□□□ -1.19
NUP54-215ENST00000514313 RFC1P35251 1148 aaPredicted RBP7.63□□□□□ -1.19
NUP54-215ENST00000514313 PIK3CAP42336 1068 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 CAMPP49913 170 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 TMPRSS3P57727 454 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 STIM1Q13586 685 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 ZSCAN23Q3MJ62 389 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 MEX3CQ5U5Q3 659 aaKnown RBP7.63□□□□□ -1.19
NUP54-215ENST00000514313 SLC35F3Q8IY50 421 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 FAM185AQ8N0U4 392 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 Q8N1X5 172 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 ZCCHC9Q8N567 271 aaKnown RBP7.63□□□□□ -1.19
NUP54-215ENST00000514313 NKAIN3Q8N8D7 197 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 MCPH1Q8NEM0 835 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 CNDP2Q96KP4 475 aaKnown RBP7.63□□□□□ -1.19
NUP54-215ENST00000514313 SIL1Q9H173 461 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 NDST4Q9H3R1 872 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 PLK3Q9H4B4 646 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 MVB12BQ9H7P6 319 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 RNF146Q9NTX7 359 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 GIMAP4Q9NUV9 329 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 KLHL13Q9P2N7 655 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 NDRG3Q9UGV2 375 aa7.63□□□□□ -1.19
NUP54-215ENST00000514313 ZNF335Q9H4Z2 1342 aaPredicted RBP7.62□□□□□ -1.19
NUP54-215ENST00000514313 KIR2DS5A0A0G2JLQ3 304 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 OR2A25A4D2G3 310 aa7.62□□□□□ -1.19
NUP54-215ENST00000514313 LRRC3CA6NJW4 275 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms