RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 TOMM40O96008 361 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 MT-CYBP00156 380 aaPredicted RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 IRF1P10914 325 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 HOXB2P14652 356 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CDAP32320 146 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 NR4A2P43354 598 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 TMPRSS3P57727 454 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ZP1P60852 638 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 OLR1P78380 273 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ADORA2A-AS1P86434 159 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 LMOD3Q0VAK6 560 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 EIF4A2Q14240 407 aaKnown RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 SHBQ15464 509 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ALG11Q2TAA5 492 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 DLK2Q6UY11 383 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 C4orf50Q6ZRC1 276 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CNTROBQ8N137 903 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 URB1-AS1Q96HZ7 61 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ITPAQ9BY32 194 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 LHPPQ9H008 270 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CKAP5Q14008 2032 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 A0A1W2PRG0 241 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 I6L893 689 aaPredicted RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ARSBP15848 533 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 MYF6P23409 242 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 TM4SF1P30408 202 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 MAPK4P31152 587 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CTCFP49711 727 aaPredicted RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 TMEM115Q12893 351 aaPredicted RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 GRIK3Q13003 919 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 PTGR1Q14914 329 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 VEPH1Q14D04 833 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CCNG2Q16589 344 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 SOWAHAQ2M3V2 549 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ZNF284Q2VY69 593 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 LEXMQ3ZCV2 418 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 GLIPR1L2Q4G1C9 344 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ESCO2Q56NI9 601 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 WASHC2DQ5SRD0 308 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 DCAF12L2Q5VW00 463 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CPLX4Q7Z7G2 160 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 SFTPA2Q8IWL1 248 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 CCDC105Q8IYK2 499 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 GJC3Q8NFK1 279 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 GPT2Q8TD30 523 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 LPAR1Q92633 364 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 SLC25A28Q96A46 364 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 FAM149B1Q96BN6 582 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 INTS12Q96CB8 462 aaKnown RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 NLRP4Q96MN2 994 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 MXRA8Q9BRK3 442 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 POLDIP3Q9BY77 421 aaKnown RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 ISCUQ9H1K1 167 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 FOXP1Q9H334 677 aaPredicted RBP4.63□□□□□ -1.67
CCDC54-201ENST00000261058 TTC3P53804 2025 aa4.63□□□□□ -1.67
CCDC54-201ENST00000261058 USP17L23D6RBM5 183 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 CHL1O00533 1208 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 LIASO43766 372 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 PTP4A3O75365 173 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 LCATP04180 440 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 CDH2P19022 906 aaPredicted RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 SHMT1P34896 483 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 RFX5P48382 616 aaPredicted RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 TRAF1Q13077 416 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 CAPSQ13938 189 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 FGFBP1Q14512 234 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 SGO1Q5FBB7 561 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 CPLX2Q6PUV4 134 aaKnown RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 NOXA1Q86UR1 476 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 TMEM116Q8NCL8 245 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 C7orf57Q8NEG2 295 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 PSPC1Q8WXF1 523 aaKnown RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 PABPC5Q96DU9 382 aaKnown RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 ZNF48Q96MX3 618 aaPredicted RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 PLAC1Q9HBJ0 212 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 DDX4Q9NQI0 724 aaKnown RBP4.62□□□□□ -1.67
CCDC54-201ENST00000261058 ASAH2Q9NR71 780 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 SMYD2Q9NRG4 433 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 DIAPH3Q9NSV4 1193 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 POT1Q9NUX5 634 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 ADAM18Q9Y3Q7 739 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 NFE2L3Q9Y4A8 694 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 RUSC2Q8N2Y8 1516 aa4.62□□□□□ -1.67
CCDC54-201ENST00000261058 UTYO14607 1347 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 LIPT2A6NK58 231 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 TTC36A6NLP5 189 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 LRRC53A6NM62 1247 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 INO80B-WBP1J3KQ70 363 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 SEC14L5O43304 696 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 RNASEH2AO75792 299 aaKnown RBP4.61□□□□□ -1.67
CCDC54-201ENST00000261058 ACADMP11310 421 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 PSG1P11464 419 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 CHATP28329 748 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 THPOP40225 353 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 PBX3P40426 434 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 RFX2P48378 723 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 GNAQP50148 359 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 ZNF81P51508 661 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 CLCN5P51795 746 aa4.61□□□□□ -1.67
CCDC54-201ENST00000261058 RARSP54136 660 aaKnown RBP4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms