RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 ABL2P42684 1182 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 MARSP56192 900 aaKnown RBP17.15■□□□□ 0.34
VPS29-204ENST00000548259 CCL7P80098 99 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 ARF5P84085 180 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 NFKB2Q00653 900 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 HID1Q8IV36 788 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 DRC7Q8IY82 874 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 KYQ8NBH2 561 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 OR2AP1Q8NGE2 309 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 PCDH19Q8TAB3 1148 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 SLC25A18Q9H1K4 315 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 LRRN3Q9H3W5 708 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 RETREG1Q9H6L5 497 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 APEX2Q9UBZ4 518 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 ITM2BQ9Y287 266 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 PCDHGA4Q9Y5G9 962 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 SNX10Q9Y5X0 201 aa17.15■□□□□ 0.34
VPS29-204ENST00000548259 A0A1W2PQC6 194 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 MMP20O60882 483 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 GSRP00390 522 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 XPAP23025 273 aaPredicted RBP17.14■□□□□ 0.33
VPS29-204ENST00000548259 SCNN1AP37088 669 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 TBR1Q16650 682 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 PTPN20Q4JDL3 420 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 ISM2Q6H9L7 571 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 TRIM65Q6PJ69 517 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 GDPD4Q6W3E5 623 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 CCNJLQ8IV13 435 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 MSANTD4Q8NCY6 345 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 OR6K2Q8NGY2 324 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 NT5C3BQ969T7 300 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 TIGD1Q96MW7 591 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 KLHL32Q96NJ5 620 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 EPAS1Q99814 870 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 GDPD2Q9HCC8 539 aa17.14■□□□□ 0.33
VPS29-204ENST00000548259 GEMIN8Q9NWZ8 242 aaKnown RBP17.14■□□□□ 0.33
VPS29-204ENST00000548259 PPARGC1AQ9UBK2 798 aaKnown RBP17.14■□□□□ 0.33
VPS29-204ENST00000548259 TLN1Q9Y490 2541 aaKnown RBP17.14■□□□□ 0.33
VPS29-204ENST00000548259 AHCTF1Q8WYP5 2266 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 AREL1O15033 823 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 HGFP14210 728 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 SUOXP51687 545 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 BPIFB4P59827 614 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 TLE1Q04724 770 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 MORC3Q14149 939 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 LRRC14Q15048 493 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 KLHL40Q2TBA0 621 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 MYLK3Q32MK0 819 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 FAM102AQ5T9C2 384 aaPredicted RBP17.13■□□□□ 0.33
VPS29-204ENST00000548259 OTUD1Q5VV17 481 aaPredicted RBP17.13■□□□□ 0.33
VPS29-204ENST00000548259 GBP6Q6ZN66 633 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 RD3Q7Z3Z2 195 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 TMEM35BQ8NCS4 154 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 SHC3Q92529 594 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 GDAP1L1Q96MZ0 367 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 TBCBQ99426 244 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 CRACR2AQ9BSW2 395 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 B3GNT4Q9C0J1 378 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 ADNPQ9H2P0 1102 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 ANLNQ9NQW6 1124 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 GGT7Q9UJ14 662 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 ZDHHC9Q9Y397 364 aa17.13■□□□□ 0.33
VPS29-204ENST00000548259 PRAMEF33A0A0G2JMD5 474 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 ZSCAN5CA6NGD5 496 aaPredicted RBP17.12■□□□□ 0.33
VPS29-204ENST00000548259 BECN2A8MW95 431 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 ZW10O43264 779 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 PRAMEF10O60809 474 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 TNFP01375 233 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 CD44P16070 742 aaKnown RBP17.12■□□□□ 0.33
VPS29-204ENST00000548259 PNLIPP16233 465 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 GLB1P16278 677 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 MAPKAPK2P49137 400 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 ELP6Q0PNE2 266 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 ARHGEF7Q14155 803 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 ENPP7Q6UWV6 458 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 Q8N9G6 341 aaPredicted RBP17.12■□□□□ 0.33
VPS29-204ENST00000548259 ARHGEF2Q92974 986 aaKnown RBP17.12■□□□□ 0.33
VPS29-204ENST00000548259 C18orf8Q96DM3 657 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 KLQ9UEF7 1012 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 RABGEF1Q9UJ41 708 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 APPL1Q9UKG1 709 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 MAN1B1Q9UKM7 699 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 CTNND2Q9UQB3 1225 aa17.12■□□□□ 0.33
VPS29-204ENST00000548259 A0A1W2PQM1 296 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 IGSF6O95976 241 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 CELA2BP08218 269 aaPredicted RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 TFE3P19532 575 aaPredicted RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 GKP32189 559 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 ATP1A2P50993 1020 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 MAPK10P53779 464 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 SRP54P61011 504 aaKnown RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 PAK1Q13153 545 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 NFATC4Q14934 902 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 EXOC3L4Q17RC7 722 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 RWDD4Q6NW29 188 aaKnown RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 GJB7Q6PEY0 223 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 VASH2Q86V25 355 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 CREBRFQ8IUR6 639 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 TP53I13Q8NBR0 393 aaPredicted RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 CASKIN2Q8WXE0 1202 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms