RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 CYP1A2P05177 515 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 CDK4P11802 303 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 TIMP2P16035 220 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 IL1R2P27930 398 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 CSNK1DP48730 415 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 SGCGQ13326 291 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 PIGHQ14442 188 aaPredicted RBP19.63■□□□□ 0.73
USP40-207ENST00000450940 PPP6R3Q5H9R7 873 aaPredicted RBP19.63■□□□□ 0.73
USP40-207ENST00000450940 GALNT15Q8N3T1 639 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 LZTR1Q8N653 840 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 DENND6BQ8NEG7 585 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19.63■□□□□ 0.73
USP40-207ENST00000450940 CALN1Q9BXU9 219 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 THAP2Q9H0W7 228 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 NENFQ9UMX5 172 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 ITM2BQ9Y287 266 aa19.63■□□□□ 0.73
USP40-207ENST00000450940 INSIG1O15503 277 aa19.62■□□□□ 0.73
USP40-207ENST00000450940 DAPK3O43293 454 aa19.62■□□□□ 0.73
USP40-207ENST00000450940 DGKAP23743 735 aa19.62■□□□□ 0.73
USP40-207ENST00000450940 NPWQ8N729 165 aa19.62■□□□□ 0.73
USP40-207ENST00000450940 CENPTQ96BT3 561 aa19.62■□□□□ 0.73
USP40-207ENST00000450940 ZNF641Q96N77 438 aaPredicted RBP19.62■□□□□ 0.73
USP40-207ENST00000450940 FREM2Q5SZK8 3169 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 WDFY3Q8IZQ1 3526 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 SPTY2D1-AS1A0A0U1RR47 76 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 NEMP1O14524 444 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 FPGTO14772 594 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 BUB1BO60566 1050 aaPredicted RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 TCF4P15884 667 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 RABIFP47224 123 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 ACADVLP49748 655 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 PFN3P60673 137 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 IL10RBQ08334 325 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 NSUN2Q08J23 767 aaKnown RBP eCLIP19.61■□□□□ 0.73
USP40-207ENST00000450940 DNAJC3Q13217 504 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 ZNF211Q13398 564 aaPredicted RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 RFTN1Q14699 578 aaPredicted RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 PROX2Q3B8N5 592 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 TMEM52BQ4KMG9 183 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 ALKBH5Q6P6C2 394 aaKnown RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 POLNQ7Z5Q5 900 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 TEKT4Q8WW24 435 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 ZCCHC14Q8WYQ9 949 aaKnown RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 EXOC2Q96KP1 924 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 TUBGCP5Q96RT8 1024 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 XPO4Q9C0E2 1151 aaKnown RBP19.61■□□□□ 0.73
USP40-207ENST00000450940 SUV39H2Q9H5I1 410 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 ZWILCHQ9H900 591 aa19.61■□□□□ 0.73
USP40-207ENST00000450940 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP19.61■□□□□ 0.73
USP40-207ENST00000450940 CHD6Q8TD26 2715 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 H3BRJ5 948 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 TRIM38O00635 465 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 SDC3O75056 442 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 PIAS2O75928 621 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 GIMD1P0DJR0 217 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 RARAP10276 462 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 CKMT2P17540 419 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 CASP14P31944 242 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 ILKQ13418 452 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 CAMK2BQ13554 666 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 FZD2Q14332 565 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 DHRS13Q6UX07 377 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 PTAR1Q7Z6K3 402 aaPredicted RBP19.6■□□□□ 0.73
USP40-207ENST00000450940 SRLQ86TD4 932 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 TMPRSS12Q86WS5 348 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 TSEN2Q8NCE0 465 aaKnown RBP19.6■□□□□ 0.73
USP40-207ENST00000450940 OR4C6Q8NH72 309 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 UCKL1Q9NWZ5 548 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 IP6K2Q9UHH9 426 aa19.6■□□□□ 0.73
USP40-207ENST00000450940 RFPL3O75679 317 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 PALMO75781 387 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 PIGNO95427 931 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 CSF2P04141 144 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 TPM3P06753 285 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ITIH2P19823 946 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ACP1P24666 158 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ARL4AP40617 200 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 RGRP47804 291 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 SLC25A11Q02978 314 aaKnown RBP19.59■□□□□ 0.73
USP40-207ENST00000450940 ELP6Q0PNE2 266 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 UGP2Q16851 508 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 CCDC122Q5T0U0 273 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 BRAT1Q6PJG6 821 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ARHGAP36Q6ZRI8 547 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ZNF599Q96NL3 588 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 NUP85Q9BW27 656 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 IPO11Q9UI26 975 aaKnown RBP19.59■□□□□ 0.73
USP40-207ENST00000450940 ANAPC7Q9UJX3 599 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 ANKRD11Q6UB99 2663 aaPredicted RBP19.59■□□□□ 0.73
USP40-207ENST00000450940 MYLKQ15746 1914 aa19.59■□□□□ 0.73
USP40-207ENST00000450940 SRRM3A6NNA2 597 aaPredicted RBP19.58■□□□□ 0.72
USP40-207ENST00000450940 TAF4O00268 1085 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 TOR1BO14657 336 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 SIGLEC6O43699 453 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 MMP20O60882 483 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 TM7SF2O76062 418 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 NME1P15531 152 aaKnown RBP19.58■□□□□ 0.72
USP40-207ENST00000450940 AMPD1P23109 780 aa19.58■□□□□ 0.72
USP40-207ENST00000450940 HNRNPKP61978 463 aaKnown RBP eCLIP19.58■□□□□ 0.72
USP40-207ENST00000450940 YPEL5P62699 121 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms