RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 KLHDC7AQ5VTJ3 777 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ZNF280DQ6N043 979 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CYB5R4Q7L1T6 521 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 NEDD1Q8NHV4 660 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SEMA4DQ92854 862 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CLIP3Q96DZ5 547 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 MID1O15344 667 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 MPZL2O60487 215 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 POLR2EP19388 210 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SERPINA4P29622 427 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CTXN3Q4LDR2 81 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 GNASQ5JWF2 1037 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ALKBH2Q6NS38 261 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC12A8A0AV02 714 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 H3BUI4 141 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC28A2O43868 658 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ORC5O43913 435 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 TMEM192Q8IY95 271 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CHST4Q8NCG5 386 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 NXPE2Q96DL1 559 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 DDX3XO00571 662 aaKnown RBP eCLIP14.03□□□□□ -0.161e-13■■■■□ 20.8
CCDC88A-201ENST00000263630 JCHAINP01591 159 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CSF1RP07333 972 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 THPOP40225 353 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 HM13Q8TCT9 377 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SIPA1Q96FS4 1042 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FOXN3O00409 490 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 PROCP04070 461 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 CDK16Q00536 496 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ARSJQ5FYB0 599 aaPredicted RBP14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC9A4Q6AI14 798 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 GATAD2BQ8WXI9 593 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 MAFIPQ8WZ33 124 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ANKRD7Q92527 254 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 MFSD1Q9H3U5 465 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 TRPS1Q9UHF7 1281 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FTH1P02794 183 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FAM189A2Q15884 450 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FNBP1LQ5T0N5 605 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FRRS1Q6ZNA5 592 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 IL22Q9GZX6 179 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ATXN2Q99700 1313 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 DNMT1P26358 1616 aaKnown RBP14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 AMHR2Q16671 573 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 VMACQ2NL98 169 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC47A1Q96FL8 570 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 TMEM68Q96MH6 324 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 HEG1Q9ULI3 1381 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC30A4O14863 429 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ENDOD1O94919 500 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 NCK1P16333 377 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 FBXL19Q6PCT2 694 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 GCNT7Q6ZNI0 430 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 SYT15Q9BQS2 421 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 ARL5AQ9Y689 179 aa14.03□□□□□ -0.16
CCDC88A-201ENST00000263630 PP2D1A8MPX8 630 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 M0R036 132 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 MAFKO60675 156 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 XYLBO75191 536 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 DCP1AQ9NPI6 582 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 GZMAP12544 262 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 RPS2P15880 293 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 ATP4AP20648 1035 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 RPL5P46777 297 aaKnown RBP14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 MYL6P60660 151 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 CDK12Q9NYV4 1490 aaPredicted RBP14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 ARAP3Q8WWN8 1544 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 CROCCQ5TZA2 2017 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 DCLK1O15075 740 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 TSPAN5P62079 268 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 ARMC12Q5T9G4 340 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 PI16Q6UXB8 463 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 PDPRQ8NCN5 879 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 PI4K2AQ9BTU6 479 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 RHBGQ9H310 441 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 SLC27A6Q9Y2P4 619 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 HMGXB3Q12766 1538 aa14.02□□□□□ -0.16
CCDC88A-201ENST00000263630 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 NOL4O94818 638 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 ACAT1P24752 427 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 SHC4Q6S5L8 630 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 SNX32Q86XE0 403 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 FBXW8Q8N3Y1 598 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 IL17REQ8NFR9 667 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 HDAC7Q8WUI4 952 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 THAP2Q9H0W7 228 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 A0A096LPK6 155 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 RPL14P50914 215 aaKnown RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 PYDC1Q8WXC3 89 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 MYH8P13535 1937 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 IFNA7P01567 189 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 PDK3Q15120 406 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 AFTPHQ6ULP2 937 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 ZNF720Q7Z2F6 126 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 CDH19Q9H159 772 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 CUEDC1Q9NWM3 386 aaPredicted RBP14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 MAT2BQ9NZL9 334 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 CARD8Q9Y2G2 431 aa14.02□□□□□ -0.17
CCDC88A-201ENST00000263630 C2CD2Q9Y426 696 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms