RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 KLHL6Q8WZ60 621 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 ZIC5Q96T25 663 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 RMND5AQ9H871 391 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 GPN2Q9H9Y4 310 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 APOBEC3BQ9UH17 382 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 RARRES3Q9UL19 164 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 LMO7Q8WWI1 1683 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 KIAA1210Q9ULL0 1709 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 ATMINO43313 823 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 DLX3O60479 287 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 GSNP06396 782 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 RAB28P51157 221 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 ARHGAP1Q07960 439 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC13A2Q13183 592 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 DHX34Q14147 1143 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 EEF1DP3Q658K8 133 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 CYP4Z1Q86W10 505 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEM151BQ8IW70 566 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM9CQ8IZT9 166 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TRIML2Q8N7C3 387 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 HSPA12BQ96MM6 686 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEM131LA2VDJ0 1609 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 A0A087X0B3 334 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 A0A1B0GVM2 712 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TCAF2A6NFQ2 919 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 LEFTY2O00292 366 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 GSTM1P09488 218 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 POU1F1P28069 291 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SERPINB4P48594 390 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 C17orf64Q86WR6 236 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 HORMAD2Q8N7B1 307 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF461Q8TAF7 563 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 HGH1Q9BTY7 390 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 IARS2Q9NSE4 1012 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SCHIP1Q9P0W5 487 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 PHTF1Q9UMS5 762 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TP53P04637 393 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SLC8A1P32418 973 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SH3BGRP55822 239 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 SPEM2Q0P670 501 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 ELOA2Q8IYF1 753 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TUBGCP3Q96CW5 907 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 TBL1YQ9BQ87 522 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM83CQ9BQN1 747 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 DUSP23Q9BVJ7 150 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 DUSP16Q9BY84 665 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 EPN3Q9H201 632 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 XAB2Q9HCS7 855 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 STK38LQ9Y2H1 464 aa9.29□□□□□ -0.92
LIMCH1-202ENST00000381753 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 GALTP07902 379 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ACP5P13686 325 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 HLA-EP13747 358 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ZNF8P17098 575 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TNFRSF4P43489 277 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 DEFB103AP81534 67 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 GALNTL6Q49A17 601 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 PRRT3Q5FWE3 981 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 RBM43Q6ZSC3 357 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 TMEFF1Q8IYR6 380 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 HDAC7Q8WUI4 952 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 NXPE3Q969Y0 559 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SGF29Q96ES7 293 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 GBP5Q96PP8 586 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 COPS8Q99627 209 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CDC6Q99741 560 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM96AQ9H5X1 160 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 HEBP1Q9NRV9 189 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ZDHHC7Q9NXF8 308 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 NENFQ9UMX5 172 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CYP1A1P04798 512 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 C1DQ13901 141 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 DPCR1Q3MIW9 517 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ABHD15Q6UXT9 468 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ANKRD52Q8NB46 1076 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ZBTB10Q96DT7 871 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 HSFY1Q96LI6 401 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SEMA3CQ99985 751 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CLSTN3Q9BQT9 956 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 PDLIM7Q9NR12 457 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ERI2A8K979 691 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 E5RJQ4 531 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ICAM3P32942 547 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 CDH4P55283 916 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SKOR1P84550 965 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SHROOM1Q2M3G4 852 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 VWA2Q5GFL6 755 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM151BQ6UXP7 276 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SV2AQ7L0J3 742 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM162AQ96A26 154 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 MRPL48Q96GC5 212 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SNF8Q96H20 258 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 RBM18Q96H35 190 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 INPP4AQ96PE3 977 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 ARRDC1-AS1Q9H2J1 176 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 FAM86C1Q9NVL1 165 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 SIK3Q9Y2K2 1263 aa9.28□□□□□ -0.92
LIMCH1-202ENST00000381753 PIK3CDO00329 1044 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms