RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 XPO6Q96QU8 1125 aaKnown RBP18.83■□□□□ 0.6
CLN3-206ENST00000360019 TMEM109Q9BVC6 243 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 ARNT2Q9HBZ2 717 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 MED4Q9NPJ6 270 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 SCUBE2Q9NQ36 999 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 CD207Q9UJ71 328 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 HS3ST2Q9Y278 367 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 LOC285095A0A1B0GVY8 99 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 TCRBV9S1A1TA0A576 114 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 AP3B1O00203 1094 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 ATP9BO43861 1147 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 OPA1O60313 960 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 TULP3O75386 442 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 ATXN1LP0C7T5 689 aaKnown RBP18.82■□□□□ 0.6
CLN3-206ENST00000360019 PSMC3P17980 439 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 PHBP35232 272 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 DGKGP49619 791 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 SLC20A2Q08357 652 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 MESP2Q0VG99 397 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 GPS2Q13227 327 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 DMC1Q14565 340 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 STAT4Q14765 748 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 SLC14A2Q15849 920 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 LONRF1Q17RB8 773 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 KRT71Q3SY84 523 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 ATXN7L2Q5T6C5 722 aaPredicted RBP18.82■□□□□ 0.6
CLN3-206ENST00000360019 SLC25A41Q8N5S1 370 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 MYLIPQ8WY64 445 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 TM6SF2Q9BZW4 377 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 IL22Q9GZX6 179 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 RABGEF1Q9UJ41 708 aa18.82■□□□□ 0.6
CLN3-206ENST00000360019 MIA3Q5JRA6 1907 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SMIM23A6NLE4 172 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 ECI2O75521 394 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SPAG6O75602 509 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 C1QAP02745 245 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 PGAM1P18669 254 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 CES1P23141 567 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SP100P23497 879 aaPredicted RBP18.81■□□□□ 0.6
CLN3-206ENST00000360019 CDK18Q07002 472 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SLC1A5Q15758 541 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 DGKKQ5KSL6 1271 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 STEAP4Q687X5 459 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 MBLAC2Q68D91 279 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 NCEH1Q6PIU2 408 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 YAF2Q8IY57 180 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TTC17Q96AE7 1141 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 FEM1CQ96JP0 617 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TRIB3Q96RU7 358 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 ACSS3Q9H6R3 686 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TMBIM4Q9HC24 238 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 EPS15L1Q9UBC2 864 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 GRXCR2A6NFK2 248 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TCEA3O75764 348 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 PIAS1O75925 651 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 MYZAPP0CAP1 466 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SLCO1A2P46721 670 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SLC6A11P48066 632 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 ECT2LQ008S8 904 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SULT2A1Q06520 285 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 RUNX3Q13761 415 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 EFTUD2Q15029 972 aaKnown RBP eCLIP18.81■□□□□ 0.63e-6■■■■□ 22
CLN3-206ENST00000360019 HSP90B2PQ58FF3 399 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TTMPQ5BVD1 217 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 METTL3Q86U44 580 aaKnown RBP18.81■□□□□ 0.6
CLN3-206ENST00000360019 CCNJLQ8IV13 435 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SH2D3CQ8N5H7 860 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 GSDMBQ8TAX9 411 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 NAT9Q9BTE0 207 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 TDRD1Q9BXT4 1180 aaKnown RBP18.81■□□□□ 0.6
CLN3-206ENST00000360019 ROPN1BQ9BZX4 212 aaPredicted RBP18.81■□□□□ 0.6
CLN3-206ENST00000360019 ROPN1Q9HAT0 212 aaPredicted RBP18.81■□□□□ 0.6
CLN3-206ENST00000360019 GTSE1Q9NYZ3 720 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SLC25A13Q9UJS0 675 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 SLC27A6Q9Y2P4 619 aa18.81■□□□□ 0.6
CLN3-206ENST00000360019 EXOC1LA0A1B0GW35 172 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 EPOP01588 193 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 GSTA2P09210 222 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 GCAP28676 217 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 MSLNQ13421 630 aaPredicted RBP18.8■□□□□ 0.6
CLN3-206ENST00000360019 POU6F1Q14863 301 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 CRYMQ14894 314 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 SIRPB2Q5JXA9 342 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 TRMT10BQ6PF06 316 aaKnown RBP18.8■□□□□ 0.6
CLN3-206ENST00000360019 CES3Q6UWW8 571 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 TMEM135Q86UB9 458 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 GOLGA6L1Q8N7Z2 621 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 TTC8Q8TAM2 541 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 IFT43Q96FT9 208 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 TNKS2Q9H2K2 1166 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 SAMD15Q9P1V8 674 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 SLCO3A1Q9UIG8 710 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 PCDHGC4Q9Y5F7 938 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 NUMBLQ9Y6R0 609 aa18.8■□□□□ 0.6
CLN3-206ENST00000360019 TLDC2A0PJX2 215 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 RASGRF2O14827 1237 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 POLR2EP19388 210 aaKnown RBP18.79■□□□□ 0.6
CLN3-206ENST00000360019 GDI1P31150 447 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 GALNT3Q14435 633 aa18.79■□□□□ 0.6
CLN3-206ENST00000360019 CCDC85BQ15834 202 aaPredicted RBP18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms