RNA–Protein interactions for RNA: ENST00000551111.1

PRPF40B-212, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 1,061 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-212ENST00000551111 ADRA1BP35368 520 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 CLCN6P51797 869 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 NEK3P51956 506 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 SNX16P57768 344 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 PTP4A2Q12974 167 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 MTA1Q13330 715 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 TCP11X2Q5H9J9 407 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 ATXN7L2Q5T6C5 722 aaPredicted RBP11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 PCSK4Q6UW60 755 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 PYROXD2Q8N2H3 581 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 SNIP1Q8TAD8 396 aaKnown RBP11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 NAF1Q96HR8 494 aaKnown RBP11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 CCDC114Q96M63 670 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 STK33Q9BYT3 514 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 VPS16Q9H269 839 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 NOL6Q9H6R4 1146 aaKnown RBP11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 DYRK4Q9NR20 520 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 OR12D3Q9UGF7 316 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 HS3ST3A1Q9Y663 406 aa11.76□□□□□ -0.53
PRPF40B-212ENST00000551111 SPTY2D1-AS1A0A0U1RR47 76 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 C2CD4BA6NLJ0 364 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 C16orf96A6NNT2 1141 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 A6NNZ2 444 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 SCAMP1O15126 338 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 LRIG2O94898 1065 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 CYP1A1P04798 512 aaPredicted RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 MMP8P22894 467 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 RECQLP46063 649 aaPredicted RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 HDAC4P56524 1084 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 EIF2B5Q13144 721 aaKnown RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 RETSATQ6NUM9 610 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 RWDD4Q6NW29 188 aaKnown RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 CRTC1Q6UUV9 634 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 FAM114A1Q8IWE2 563 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 SPACA3Q8IXA5 215 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 RBFAQ8N0V3 343 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 PCDH20Q8N6Y1 951 aaKnown RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 ZNF548Q8NEK5 533 aaPredicted RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 FGF11Q92914 225 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 ARHGEF2Q92974 986 aaKnown RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 FEM1CQ96JP0 617 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 C11orf70Q9BRQ4 267 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 C1QTNF2Q9BXJ5 285 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 NLRC4Q9NPP4 1024 aa11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 PPARGC1AQ9UBK2 798 aaKnown RBP11.75□□□□□ -0.53
PRPF40B-212ENST00000551111 COL6A6A6NMZ7 2263 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 AP1G1O43747 822 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 GCATO75600 419 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 LSM8O95777 96 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 UGT2B4P06133 528 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 TGM2P21980 687 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 ERCC5P28715 1186 aaPredicted RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 JAM2P57087 298 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 POLR2FP61218 127 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 RPS21P63220 83 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 E2F1Q01094 437 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 TLE3Q04726 772 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 SLC20A2Q08357 652 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 C1orf61Q13536 156 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 DEFB133Q30KQ1 61 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 TBC1D25Q3MII6 688 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 SMYD5Q6GMV2 418 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 KIAA1161Q6NSJ0 714 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 GUSBP11Q6P575 273 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 KYAT3Q6YP21 454 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 ZNF783Q6ZMS7 281 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 ARCQ7LC44 396 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 CACTIN-AS1Q8N1I8 211 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 RYBPQ8N488 228 aaPredicted RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 BAP1Q92560 729 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 CENPIQ92674 756 aaPredicted RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 KLHL32Q96NJ5 620 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 FCRL3Q96P31 734 aaPredicted RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 CEP44Q9C0F1 390 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 MBNL1Q9NR56 388 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 FAM207AQ9NSI2 230 aaPredicted RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 NLGN3Q9NZ94 848 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 PAXBP1Q9Y5B6 917 aa11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 SETXQ7Z333 2677 aaKnown RBP11.74□□□□□ -0.53
PRPF40B-212ENST00000551111 KRIT1O00522 736 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 AREL1O15033 823 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 INSIG1O15503 277 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 MMP20O60882 483 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 USP12O75317 370 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 CSO75390 466 aaKnown RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 CSF2P04141 144 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 CELA2BP08218 269 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 PLEKP08567 350 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 UNGP13051 313 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 NME1P15531 152 aaKnown RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 RHOQP17081 205 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 JUNDP17535 347 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 RFC1P35251 1148 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 IGFALSP35858 605 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 PFN3P60673 137 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 CDR2Q01850 454 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 NRG1Q02297 640 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 PDE1CQ14123 709 aaPredicted RBP11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 KRT31Q15323 416 aa11.73□□□□□ -0.53
PRPF40B-212ENST00000551111 CDKN3Q16667 212 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms