RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 CADM4Q8NFZ8 388 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 SNX19Q92543 992 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 GDAP1L1Q96MZ0 367 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 SEMA4GQ9NTN9 838 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 DDX56Q9NY93 547 aaKnown RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 PCDHGA5Q9Y5G8 931 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.57□□□□□ -0.24
VPS28-210ENST00000529182 SLCO1B1Q9Y6L6 691 aa13.57□□□□□ -0.24
VPS28-210ENST00000529182 TNRC6BQ9UPQ9 1833 aaKnown RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 TTC24A2A3L6 582 aaPredicted RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 METTL12A8MUP2 240 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 MUSKO15146 869 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 IGSF6O95976 241 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 UGT2B4P06133 528 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 KRT10P13645 584 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 CDKN2BP42772 138 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 DYNLT1P63172 113 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 LBRQ14739 615 aaKnown RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 PIP5KL1Q5T9C9 394 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 TMCO4Q5TGY1 634 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 NPNTQ6UXI9 565 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 RFX6Q8HWS3 928 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 SYT12Q8IV01 421 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 LRRC57Q8N9N7 239 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 TSEN2Q8NCE0 465 aaKnown RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 FOXJ1Q92949 421 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 FAM131CQ96AQ9 280 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 KLHL32Q96NJ5 620 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 CINPQ9BW66 212 aaPredicted RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 MAK16Q9BXY0 300 aaKnown RBP13.56□□□□□ -0.24
VPS28-210ENST00000529182 MIR1-1HGQ9H1L0 117 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 DYRK4Q9NR20 520 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 DTLQ9NZJ0 730 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 PILRBQ9UKJ0 227 aa13.56□□□□□ -0.24
VPS28-210ENST00000529182 CEP192Q8TEP8 1941 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3DA0A087WVF3 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3IA0A087WXS9 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3EA0A087X179 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3KA0A087X1G2 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3FA6NER0 549 aaPredicted RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 LRRC72A6NJI9 287 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 ZNF487B1APH4 448 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3LB9A6J9 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 APOL1O14791 398 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PLRG1O43660 514 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 LRP3O75074 770 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PIGNO95427 931 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 POP4O95707 220 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 IGHV4-34P06331 123 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3HP0C7X1 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 ZNF806P0C7X5 589 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 CTNNA1P35221 906 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 GARSP41250 739 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 TAS2R38P59533 333 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PPP2CBP62714 309 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PPP2CAP67775 309 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 ADCY2Q08462 1091 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 GALNT2Q10471 571 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 CSRP2Q16527 193 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 WDR45BQ5MNZ6 344 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 FAM182AQ5T1J6 154 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 SYCP2LQ5T4T6 812 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 KAZNQ674X7 775 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 KIAA0895LQ68EN5 471 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 SLC9A4Q6AI14 798 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3GQ6DHY5 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3CQ6IPX1 549 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 SPOCD1Q6ZMY3 1216 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PRR23CQ6ZRP0 262 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 ERN2Q76MJ5 926 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 PARS2Q7L3T8 475 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 VSIG1Q86XK7 387 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 KATNAL2Q8IYT4 538 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 TBC1D3Q8IZP1 549 aaPredicted RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 TXLNBQ8N3L3 684 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 OR2T34Q8NGX1 318 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 KIAA1524Q8TCG1 905 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 BIRC7Q96CA5 298 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 PPP1R16AQ96I34 528 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 CALR3Q96L12 384 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 NSMCE3Q96MG7 304 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 ZNF599Q96NL3 588 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 FSCN3Q9NQT6 498 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 VPS45Q9NRW7 570 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 RXFP3Q9NSD7 469 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 EIF2B4Q9UI10 523 aaKnown RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.55□□□□□ -0.24
VPS28-210ENST00000529182 HEY1Q9Y5J3 304 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 CAPN6Q9Y6Q1 641 aa13.55□□□□□ -0.24
VPS28-210ENST00000529182 C16orf96A6NNT2 1141 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 ZRANB2O95218 330 aaKnown RBP eCLIP13.54□□□□□ -0.242e-7■■□□□ 13.6
VPS28-210ENST00000529182 FTCDO95954 541 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 ITGB7P26010 798 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 NEK3P51956 506 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 MAXP61244 160 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 ZNF235Q14590 738 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 RFTN1Q14699 578 aaPredicted RBP13.54□□□□□ -0.24
VPS28-210ENST00000529182 TAZQ16635 292 aa13.54□□□□□ -0.24
VPS28-210ENST00000529182 ZNF805Q5CZA5 627 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms