RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 ABL2P42684 1182 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 NSFP46459 744 aaKnown RBP13.5□□□□□ -0.25
CPSF4-210ENST00000469897 MAPKAPK2P49137 400 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 FZD2Q14332 565 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 POLD3Q15054 466 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-210ENST00000469897 CLEC16AQ2KHT3 1053 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 ZNF805Q5CZA5 627 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 KIAA1161Q6NSJ0 714 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 SCYL2Q6P3W7 929 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 TRIM72Q6ZMU5 477 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 PTAR1Q7Z6K3 402 aaPredicted RBP13.5□□□□□ -0.25
CPSF4-210ENST00000469897 SLFN11Q7Z7L1 901 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 TTC7BQ86TV6 843 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 ZNF354CQ86Y25 554 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 DCP2Q8IU60 420 aaKnown RBP13.5□□□□□ -0.25
CPSF4-210ENST00000469897 CACTIN-AS1Q8N1I8 211 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 NEK11Q8NG66 645 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 OR2AP1Q8NGE2 309 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 FAM174AQ8TBP5 190 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 VOPP1Q96AW1 172 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 TBC1D31Q96DN5 1066 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 IFT43Q96FT9 208 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 KLHL32Q96NJ5 620 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 C1QTNF2Q9BXJ5 285 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 RETREG1Q9H6L5 497 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 SEPT11Q9NVA2 429 aaKnown RBP13.5□□□□□ -0.25
CPSF4-210ENST00000469897 GGT7Q9UJ14 662 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 ITM2BQ9Y287 266 aa13.5□□□□□ -0.25
CPSF4-210ENST00000469897 PKD1L2Q7Z442 2459 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 PLXNB3Q9ULL4 1909 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 PLXNA2O75051 1894 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 SPTY2D1-AS1A0A0U1RR47 76 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 CXorf51AA0A1B0GTR3 108 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 NEMP2A6NFY4 417 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 SIGLEC16A6NMB1 481 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 K7ESM1 405 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 FPGTO14772 594 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 SCAMP1O15126 338 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 NEBLO76041 1014 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 CSF2P04141 144 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 UGT2B4P06133 528 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 CKMT1AP12532 417 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 ITIH2P19823 946 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 GPD1P21695 349 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 EIF2S3P41091 472 aaKnown RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 HNRNPKP61978 463 aaKnown RBP eCLIP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 SNRPD1P62314 119 aaKnown RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 ATXN7L2Q5T6C5 722 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 GDPD4Q6W3E5 623 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 CLEC17AQ6ZS10 378 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 PHF13Q86YI8 300 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 DCBLD1Q8N8Z6 715 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 RFFLQ8WZ73 363 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 APOLD1Q96LR9 279 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 LENG8Q96PV6 779 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 KLF6Q99612 283 aaPredicted RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 KLC2Q9H0B6 622 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 LIMA1Q9UHB6 759 aaKnown RBP13.49□□□□□ -0.25
CPSF4-210ENST00000469897 KLF15Q9UIH9 416 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 NEU3Q9UQ49 428 aa13.49□□□□□ -0.25
CPSF4-210ENST00000469897 LRRC10BA6NIK2 292 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 SPINT1O43278 529 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 OPA1O60313 960 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 MMP20O60882 483 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 GSRP00390 522 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 CALB1P05937 261 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 ALPPL2P10696 532 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 CDK11BP21127 795 aaKnown RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 EPHB2P29323 1055 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 ABCG1P45844 678 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 RABIFP47224 123 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 GEMIN4P57678 1058 aaKnown RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 UBXN1Q04323 297 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 PDE1CQ14123 709 aaPredicted RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 TPRG1LQ5T0D9 272 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 SASS6Q6UVJ0 657 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 KYAT3Q6YP21 454 aaKnown RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 LRRC69Q6ZNQ3 347 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 NTAN1Q96AB6 310 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 RAB7BQ96AH8 199 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 BBC3Q96PG8 261 aaPredicted RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 AGPAT1Q99943 283 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 ABCG4Q9H172 646 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 NOL6Q9H6R4 1146 aaKnown RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 GPR27Q9NS67 375 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 NLGN3Q9NZ94 848 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 RAI2Q9Y5P3 530 aa13.48□□□□□ -0.25
CPSF4-210ENST00000469897 DSPP15924 2871 aaKnown RBP13.48□□□□□ -0.25
CPSF4-210ENST00000469897 LY6G6EA0A0G2JKS1 128 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 RRP8O43159 456 aaKnown RBP13.47□□□□□ -0.25
CPSF4-210ENST00000469897 CCP110O43303 1012 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 CREB3O43889 395 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 BRINP1O60477 761 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 TIMP2P16035 220 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 PFN3P60673 137 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 RPL7AP62424 266 aaKnown RBP13.47□□□□□ -0.25
CPSF4-210ENST00000469897 LRRC73Q5JTD7 316 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 RBM43Q6ZSC3 357 aaKnown RBP13.47□□□□□ -0.25
CPSF4-210ENST00000469897 C3orf20Q8ND61 904 aa13.47□□□□□ -0.25
CPSF4-210ENST00000469897 ZNF548Q8NEK5 533 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms