RNA–Protein interactions for RNA: ENST00000465877.1

COL5A1-206, Transcript of collagen type V alpha 1 chain, humanhuman

TSL 3

Gene COL5A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-206ENST00000465877 PLPP6Q8IY26 295 aa13.11□□□□□ -0.31
COL5A1-206ENST00000465877 ORAI3Q9BRQ5 295 aa13.11□□□□□ -0.31
COL5A1-206ENST00000465877 LUC7LQ9NQ29 371 aaKnown RBP13.11□□□□□ -0.31
COL5A1-206ENST00000465877 TMEM9BQ9NQ34 198 aa13.11□□□□□ -0.31
COL5A1-206ENST00000465877 LHX3Q9UBR4 397 aa13.11□□□□□ -0.31
COL5A1-206ENST00000465877 ASCC3Q8N3C0 2202 aaKnown RBP13.11□□□□□ -0.31
COL5A1-206ENST00000465877 KRIT1O00522 736 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 SLC30A4O14863 429 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 NDUFA10O95299 355 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 IPO7O95373 1038 aaKnown RBP13.1□□□□□ -0.31
COL5A1-206ENST00000465877 UGT2B4P06133 528 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 CD27P26842 260 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 GKP32189 559 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 ARHGAP25P42331 645 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 MAPK8P45983 427 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 NEK3P51956 506 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 TAS2R38P59533 333 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 GRIK2Q13002 908 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 ATP13A4Q4VNC1 1196 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 ZFYVE27Q5T4F4 411 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 STPG1Q5TH74 334 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 NCBP2-AS2Q69YL0 99 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 ERN2Q76MJ5 926 aaKnown RBP13.1□□□□□ -0.31
COL5A1-206ENST00000465877 TMTC1Q8IUR5 882 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 ATPAF2Q8N5M1 289 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 SPC24Q8NBT2 197 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 C1orf216Q8TAB5 229 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 VOPP1Q96AW1 172 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 LRIG1Q96JA1 1093 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 RTKNQ9BST9 563 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 OSBPL1AQ9BXW6 950 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 HDAC8Q9BY41 377 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 KDM4CQ9H3R0 1056 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 TM9SF3Q9HD45 589 aa13.1□□□□□ -0.31
COL5A1-206ENST00000465877 A0A1W2PPC4 97 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 ARHGAP33O14559 1287 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 LATO43561 262 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 ADRB3P13945 408 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 IL4RP24394 825 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 GRIA4P48058 902 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 CCR5P51681 352 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 AFF3P51826 1226 aaKnown RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 ATXN3P54252 364 aaPredicted RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 HADHBP55084 474 aaKnown RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 IL10RBQ08334 325 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 PUM1Q14671 1186 aaKnown RBP eCLIP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 PDK2Q15119 407 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 CYTH1Q15438 398 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 LAYNQ6UX15 382 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 RAD9BQ6WBX8 426 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 TRIM69Q86WT6 500 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 TMEM139Q8IV31 216 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 KCTD6Q8NC69 237 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 FAF2Q96CS3 445 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 SLC6A18Q96N87 628 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 CINPQ9BW66 212 aaPredicted RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 GTPBP2Q9BX10 602 aaKnown RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 PREBQ9HCU5 417 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 IMPACTQ9P2X3 320 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 IPO11Q9UI26 975 aaKnown RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 TPX2Q9ULW0 747 aaKnown RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 TFR2Q9UP52 801 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 PCDHA13Q9Y5I0 950 aa13.09□□□□□ -0.31
COL5A1-206ENST00000465877 EPN1Q9Y6I3 576 aaPredicted RBP13.09□□□□□ -0.31
COL5A1-206ENST00000465877 SPEGQ15772 3267 aa13.08□□□□□ -0.31
COL5A1-206ENST00000465877 TBC1D3DA0A087WVF3 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3IA0A087WXS9 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3EA0A087X179 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3KA0A087X1G2 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 A0A0A6YYK5 440 aaPredicted RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 LRRD1A4D1F6 860 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3FA6NER0 549 aaPredicted RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 C4orf47A7E2U8 309 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 GOLGA6L6A8MZA4 724 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3LB9A6J9 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 CDX4O14627 284 aaPredicted RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 SPOPO43791 374 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 PALMO75781 387 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 PIGNO95427 931 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 KRT1P04264 644 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 SYPP08247 313 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3HP0C7X1 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 ABL2P42684 1182 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 RGRP47804 291 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 RAD51Q06609 339 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 CCDC15Q0P6D6 951 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 RFTN1Q14699 578 aaPredicted RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 PAFAH1B3Q15102 231 aaKnown RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 MYLK3Q32MK0 819 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 ANKRD20A8PQ5CZ79 823 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TMCO4Q5TGY1 634 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3GQ6DHY5 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3CQ6IPX1 549 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 MAP7D3Q8IWC1 876 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 TBC1D3Q8IZP1 549 aaPredicted RBP13.08□□□□□ -0.32
COL5A1-206ENST00000465877 MINDY1Q8N5J2 469 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 ACRBPQ8NEB7 543 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 PCDH19Q8TAB3 1148 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 ZNF599Q96NL3 588 aa13.08□□□□□ -0.32
COL5A1-206ENST00000465877 BAG1Q99933 345 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms