RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ATP11CQ8NB49 1132 aa18.87■□□□□ 0.61
CLN3-206ENST00000360019 NSMCE3Q96MG7 304 aa18.87■□□□□ 0.61
CLN3-206ENST00000360019 TRIM56Q9BRZ2 755 aaKnown RBP18.87■□□□□ 0.61
CLN3-206ENST00000360019 FICDQ9BVA6 458 aa18.87■□□□□ 0.61
CLN3-206ENST00000360019 PLA2G2FQ9BZM2 168 aa18.87■□□□□ 0.61
CLN3-206ENST00000360019 FCF1Q9Y324 198 aaKnown RBP18.87■□□□□ 0.61
CLN3-206ENST00000360019 OTOL1A6NHN0 477 aaPredicted RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 K7ERQ8 282 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 HOXC11O43248 304 aaPredicted RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 ADH1CP00326 375 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 PABPC1P11940 636 aaKnown RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 CTSOP43234 321 aaPredicted RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 PCSK7Q16549 785 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 CEP85LQ5SZL2 805 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 DENND5AQ6IQ26 1287 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 LINC00523Q86TU6 105 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 RNF135Q8IUD6 432 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 PALM2Q8IXS6 379 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 ZNF557Q8N988 423 aaPredicted RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 DNAAF3Q8N9W5 541 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 FGF14Q92915 247 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 EBNA1BP2Q99848 306 aaKnown RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 SH3GL2Q99962 352 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 VPS37BQ9H9H4 285 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 SYBUQ9NX95 663 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 LHX3Q9UBR4 397 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 FBXO10Q9UK96 956 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 MAD1L1Q9Y6D9 718 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 SDR42E2A6NKP2 422 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 NFATC1O95644 943 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 CPP00450 1065 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 SERPINH1P50454 418 aaKnown RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 EIF3BP55884 814 aaKnown RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 IFFO1Q0D2I5 559 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 CDH17Q12864 832 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 PARM1Q6UWI2 310 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 RANBP10Q6VN20 620 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 C3orf62Q6ZUJ4 267 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 KDELC2Q7Z4H8 507 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 KIAA0907Q7Z7F0 614 aaPredicted RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 C12orf40Q86WS4 652 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 MFSD6LQ8IWD5 586 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 FSD1LQ9BXM9 530 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 SLC2A11Q9BYW1 496 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 NOD2Q9HC29 1040 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 HPS4Q9NQG7 708 aa18.86■□□□□ 0.61
CLN3-206ENST00000360019 ZC3H7BQ9UGR2 993 aaKnown RBP18.86■□□□□ 0.61
CLN3-206ENST00000360019 BPTFQ12830 3046 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 H3BQF6 201 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 SMAD6O43541 496 aaKnown RBP18.85■□□□□ 0.61
CLN3-206ENST00000360019 CHRNA4P43681 627 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 GRM2Q14416 872 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 GAB4Q2WGN9 574 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 CERCAMQ5T4B2 595 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 TMEM215Q68D42 235 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 ADIPOR2Q86V24 386 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLN3-206ENST00000360019 SUSD6Q92537 303 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 ATP2A3Q93084 1043 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 E2F7Q96AV8 911 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 CFAP36Q96G28 342 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 GAS2L1Q99501 681 aaPredicted RBP18.85■□□□□ 0.61
CLN3-206ENST00000360019 KXD1Q9BQD3 176 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 HAUS2Q9NVX0 235 aa18.85■□□□□ 0.61
CLN3-206ENST00000360019 THG1LQ9NWX6 298 aaKnown RBP18.85■□□□□ 0.61
CLN3-206ENST00000360019 A0A087WUV0 522 aaPredicted RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 INSIG1O15503 277 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 TSHRP16473 764 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 TPH1P17752 444 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 SCNN1BP51168 640 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 GEMIN4P57678 1058 aaKnown RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 PDGFRLQ15198 375 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 GEN1Q17RS7 908 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 UNC5AQ6ZN44 842 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 ETFBKMTQ8IXQ9 262 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 ELSPBP1Q96BH3 223 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 STAMBPL1Q96FJ0 436 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 RPL10LQ96L21 214 aaKnown RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 ECT2Q9H8V3 914 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 USP15Q9Y4E8 981 aaPredicted RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 COL4A3Q01955 1670 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 CXorf51AA0A1B0GTR3 108 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 H3BQ06 376 aaPredicted RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 SERPINF2P08697 491 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 CISD3P0C7P0 127 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 STK19P49842 368 aaPredicted RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 RHOAP61586 193 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 CASC4Q6P4E1 433 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 EPS8L3Q8TE67 593 aaKnown RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 NECTIN4Q96NY8 510 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 NUDCD1Q96RS6 583 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 RPP25Q9BUL9 199 aaKnown RBP18.84■□□□□ 0.61
CLN3-206ENST00000360019 BFARQ9NZS9 450 aa18.84■□□□□ 0.61
CLN3-206ENST00000360019 ZNF821O75541 412 aaPredicted RBP18.83■□□□□ 0.6
CLN3-206ENST00000360019 SRCP12931 536 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 NPY2RP49146 381 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 NSUN2Q08J23 767 aaKnown RBP eCLIP18.83■□□□□ 0.6
CLN3-206ENST00000360019 AHI1Q8N157 1196 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 FBF1Q8TES7 1133 aa18.83■□□□□ 0.6
CLN3-206ENST00000360019 ARL8AQ96BM9 186 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms