RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 E5RJQ4 531 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 NEBLO76041 1014 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 PCDH8O95206 1070 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 MYF5P13349 255 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 KRT5P13647 590 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CCR1P32246 355 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CLDN2P57739 230 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 HNRNPKP61978 463 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLK1-215ENST00000621181 PITX1P78337 314 aaPredicted RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 ZNF542PQ5EBM4 170 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 PIP5KL1Q5T9C9 394 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ZNF658Q5TYW1 1059 aaPredicted RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 FBXL22Q6P050 247 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 NEK5Q6P3R8 708 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 FBXO38Q6PIJ6 1188 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 PTAR1Q7Z6K3 402 aaPredicted RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 HORMAD1Q86X24 394 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SH2D3CQ8N5H7 860 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ATP11CQ8NB49 1132 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 IFI44Q8TCB0 444 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 VCPIP1Q96JH7 1222 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 PRMT1Q99873 361 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLK1-215ENST00000621181 MUC3BQ9H195 1237 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 THAP9Q9H5L6 903 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 USP29Q9HBJ7 922 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ASCL3Q9NQ33 180 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ZNF446Q9NWS9 450 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SATB2Q9UPW6 733 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 A6NNZ2 444 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 PYCARD-AS1I3L0S3 204 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 K7ESM1 405 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SCAMP1O15126 338 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ARHGAP6O43182 974 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CCP110O43303 1012 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 MED7O43513 233 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SERPINC1P01008 464 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 IGLV3-25P01717 112 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 FECHP22830 423 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 RBMS1P29558 406 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 RPL34P49207 117 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 CDK17Q00537 523 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 GCNT1Q02742 428 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 AUHQ13825 339 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 CDKN3Q16667 212 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 ZNF284Q2VY69 593 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CCDC40Q4G0X9 1142 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CDKAL1Q5VV42 579 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 Q6ZSR6 202 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SLC22A18ASQ8N1D0 253 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 OR52K2Q8NGK3 314 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 GRIN3AQ8TCU5 1115 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 SMARCE1Q969G3 411 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 CCDC97Q96F63 343 aaPredicted RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 NOX5Q96PH1 765 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 GSDMAQ96QA5 445 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 GTPBP4Q9BZE4 634 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 CAAP1Q9H8G2 361 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 HOOK1Q9UJC3 728 aaKnown RBP8.01□□□□□ -1.13
CLK1-215ENST00000621181 VANGL2Q9ULK5 521 aa8.01□□□□□ -1.13
CLK1-215ENST00000621181 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.01□□□□□ -1.132e-27■■■■■ 27.1
CLK1-215ENST00000621181 HECTD1Q9ULT8 2610 aa8□□□□□ -1.13
CLK1-215ENST00000621181 RP1P56715 2156 aa8□□□□□ -1.13
CLK1-215ENST00000621181 PPP1R3GB7ZBB8 358 aa8□□□□□ -1.13
CLK1-215ENST00000621181 H3BM21 787 aa8□□□□□ -1.13
CLK1-215ENST00000621181 PSMA7O14818 248 aa8□□□□□ -1.13
CLK1-215ENST00000621181 PMM2O15305 246 aa8□□□□□ -1.13
CLK1-215ENST00000621181 SLC28A2O43868 658 aa8□□□□□ -1.13
CLK1-215ENST00000621181 CLDN11O75508 207 aa8□□□□□ -1.13
CLK1-215ENST00000621181 PRNPP04156 253 aa8□□□□□ -1.13
CLK1-215ENST00000621181 CTSLP07711 333 aa8□□□□□ -1.13
CLK1-215ENST00000621181 GIMD1P0DJR0 217 aa8□□□□□ -1.13
CLK1-215ENST00000621181 TGM2P21980 687 aa8□□□□□ -1.13
CLK1-215ENST00000621181 CHRNA3P32297 505 aa8□□□□□ -1.13
CLK1-215ENST00000621181 GGCXP38435 758 aa8□□□□□ -1.13
CLK1-215ENST00000621181 MLLT3P42568 568 aaPredicted RBP8□□□□□ -1.13
CLK1-215ENST00000621181 RECQLP46063 649 aaPredicted RBP8□□□□□ -1.13
CLK1-215ENST00000621181 KRT83P78385 493 aa8□□□□□ -1.13
CLK1-215ENST00000621181 KCNC4Q03721 635 aa8□□□□□ -1.13
CLK1-215ENST00000621181 NME3Q13232 169 aa8□□□□□ -1.13
CLK1-215ENST00000621181 STIM1Q13586 685 aa8□□□□□ -1.13
CLK1-215ENST00000621181 TAF5Q15542 800 aa8□□□□□ -1.13
CLK1-215ENST00000621181 ISXQ2M1V0 245 aa8□□□□□ -1.13
CLK1-215ENST00000621181 COBLL1Q53SF7 1204 aa8□□□□□ -1.13
CLK1-215ENST00000621181 SEL1L3Q68CR1 1132 aa8□□□□□ -1.13
CLK1-215ENST00000621181 OR6B2Q6IFH4 312 aa8□□□□□ -1.13
CLK1-215ENST00000621181 ZCCHC8Q6NZY4 707 aaKnown RBP8□□□□□ -1.13
CLK1-215ENST00000621181 DENND1BQ6P3S1 775 aa8□□□□□ -1.13
CLK1-215ENST00000621181 FOXR1Q6PIV2 292 aa8□□□□□ -1.13
CLK1-215ENST00000621181 GCNT7Q6ZNI0 430 aa8□□□□□ -1.13
CLK1-215ENST00000621181 PRICKLE2Q7Z3G6 844 aa8□□□□□ -1.13
CLK1-215ENST00000621181 DCP2Q8IU60 420 aaKnown RBP8□□□□□ -1.13
CLK1-215ENST00000621181 ZNF548Q8NEK5 533 aaPredicted RBP8□□□□□ -1.13
CLK1-215ENST00000621181 FAM174AQ8TBP5 190 aa8□□□□□ -1.13
CLK1-215ENST00000621181 STK32AQ8WU08 396 aa8□□□□□ -1.13
CLK1-215ENST00000621181 SNRNP27Q8WVK2 155 aaKnown RBP8□□□□□ -1.13
CLK1-215ENST00000621181 TTC9Q92623 222 aa8□□□□□ -1.13
CLK1-215ENST00000621181 ALG14Q96F25 216 aa8□□□□□ -1.13
CLK1-215ENST00000621181 IFT43Q96FT9 208 aa8□□□□□ -1.13
CLK1-215ENST00000621181 MED8Q96G25 268 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms