RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PEAR1Q5VY43 1037 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 TXNRD3NBQ6F5E7 133 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 VSIG1Q86XK7 387 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 RHOT1Q8IXI2 618 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 BBS5Q8N3I7 341 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 ATPAF2Q8N5M1 289 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 NPWQ8N729 165 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 CCDC112Q8NEF3 446 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 NSMCE1Q8WV22 266 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 SNX19Q92543 992 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 TSC1Q92574 1164 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 ZNF419Q96HQ0 510 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 HEPHQ9BQS7 1158 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 OSBPL1AQ9BXW6 950 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 SLC39A8Q9C0K1 460 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 KDM4CQ9H3R0 1056 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 ZDHHC6Q9H6R6 413 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 HAUS2Q9NVX0 235 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 DDX56Q9NY93 547 aaKnown RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 HECAQ9UBI9 543 aaPredicted RBP13.22□□□□□ -0.29
CLK3-224ENST00000568605 PPM1HQ9ULR3 514 aa13.22□□□□□ -0.29
CLK3-224ENST00000568605 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.22□□□□□ -0.29
CLK3-224ENST00000568605 FRYLO94915 3013 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 WDR87Q6ZQQ6 2873 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 LRRD1A4D1F6 860 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 PRR5-ARHGAP8B1AHC4 643 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 ZNF487B1APH4 448 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 PSTPIP1O43586 416 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 PRAMEF11O60813 436 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 KRT1P04264 644 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 SDHBP21912 280 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 AMPD1P23109 780 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 ITPKAP23677 461 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 ACSL1P33121 698 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 PAPOLAP51003 745 aaKnown RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 ADPRHP54922 357 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 ARHGAP8P85298 464 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 IL10RBQ08334 325 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 IFI16Q16666 785 aaKnown RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 DUOXA1Q1HG43 343 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 TMCO4Q5TGY1 634 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 AFMIDQ63HM1 303 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 C11orf63Q6NUN7 778 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 DPY19L3Q6ZPD9 716 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 LRRC49Q8IUZ0 686 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 SLC41A1Q8IVJ1 513 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 AADATQ8N5Z0 425 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 OR2T34Q8NGX1 318 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 OR14C36Q8NHC7 312 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 ZNF830Q96NB3 372 aaPredicted RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 ZNF599Q96NL3 588 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 CINPQ9BW66 212 aaPredicted RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 NUSAP1Q9BXS6 441 aaKnown RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 PDFQ9HBH1 243 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 KLHL11Q9NVR0 708 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 SERGEFQ9UGK8 458 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 EVLQ9UI08 416 aaPredicted RBP13.21□□□□□ -0.29
CLK3-224ENST00000568605 PILRBQ9UKJ0 227 aa13.21□□□□□ -0.29
CLK3-224ENST00000568605 CEP250Q9BV73 2442 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 GOLGA6L3A6NEY3 463 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 FAM47DPA6NHR8 397 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 METTL12A8MUP2 240 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 BTNL10A8MVZ5 291 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 KRIT1O00522 736 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 LEFTY1O75610 366 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 PALMO75781 387 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 POP4O95707 220 aaKnown RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 CD160O95971 181 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 CFIP05156 583 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 ITGB7P26010 798 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 DRD3P35462 400 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 NUDT1P36639 197 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 HSPA9P38646 679 aaKnown RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 NEK3P51956 506 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 NAP1L1P55209 391 aaKnown RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 ZNF235Q14590 738 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 ANKRD20A8PQ5CZ79 823 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 TRIM61Q5EBN2 209 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 ARSIQ5FYB1 569 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 RAD9BQ6WBX8 426 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 LEKR1Q6ZMV7 388 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 ARHGAP12Q8IWW6 846 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 DEFB119Q8N690 84 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 CHST14Q8NCH0 376 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 KLC2Q9H0B6 622 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 C6orf106Q9H6K1 298 aaPredicted RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 PARD6AQ9NPB6 346 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 IPO11Q9UI26 975 aaKnown RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.2□□□□□ -0.3
CLK3-224ENST00000568605 WASF2Q9Y6W5 498 aa13.2□□□□□ -0.3
CLK3-224ENST00000568605 A0A1B0GTW7 788 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 PLRG1O43660 514 aaKnown RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 MFSD11O43934 449 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 BUB1BO60566 1050 aaPredicted RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 ZNF821O75541 412 aaPredicted RBP13.19□□□□□ -0.3
CLK3-224ENST00000568605 FSBPO95073 299 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CTSLP07711 333 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 CD48P09326 243 aa13.19□□□□□ -0.3
CLK3-224ENST00000568605 TNNT1P13805 278 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms