RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 USP15Q9Y4E8 981 aaPredicted RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 H3BNC9 293 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 SNX3O60493 162 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 MT-CYBP00156 380 aaPredicted RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 IFT88Q13099 833 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 BMPR2Q13873 1038 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 ZKSCAN8Q15776 578 aaPredicted RBP17.1■□□□□ 0.33
LDLR-206ENST00000557958 TMCO4Q5TGY1 634 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 PDPK2PQ6A1A2 396 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 CCDC121Q6ZUS5 278 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 CCDC149Q6ZUS6 474 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 SH2D5Q6ZV89 423 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.1■□□□□ 0.33
LDLR-206ENST00000557958 OTUD6BQ8N6M0 293 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 PSMG2Q969U7 264 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 SAMD11Q96NU1 681 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 MAGEH1Q9H213 219 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 ZNF212Q9UDV6 495 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 ASB3Q9Y575 518 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 IRAK3Q9Y616 596 aa17.1■□□□□ 0.33
LDLR-206ENST00000557958 CCL16O15467 120 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 UGT1A9O60656 530 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 CLDN11O75508 207 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 RFPL1O75677 317 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 PAMP19021 973 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 ADRA1DP25100 572 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 SPRP35270 261 aaPredicted RBP17.09■□□□□ 0.33
LDLR-206ENST00000557958 ITKQ08881 620 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 RAB30Q15771 203 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 PPM1LQ5SGD2 360 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 LILRA6Q6PI73 481 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 SPATA21Q7Z572 469 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 TRIM42Q8IWZ5 723 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 TEX26Q8N6G2 289 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 GDPD5Q8WTR4 605 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 SLC22A17Q8WUG5 538 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 IMP4Q96G21 291 aaKnown RBP17.09■□□□□ 0.33
LDLR-206ENST00000557958 PRKD2Q9BZL6 878 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 UGT1A7Q9HAW7 530 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 UGT1A10Q9HAW8 530 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 UGT1A8Q9HAW9 530 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 MRM3Q9HC36 420 aaKnown RBP17.09■□□□□ 0.33
LDLR-206ENST00000557958 NT5MQ9NPB1 228 aa17.09■□□□□ 0.33
LDLR-206ENST00000557958 ZCWPW2A0A1B0GU75 182 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 J3KR12 359 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 RFXAPO00287 272 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 PMPCBO75439 489 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 LATS1O95835 1130 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 PEX11BO96011 259 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 OAS1P00973 400 aaKnown RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 ERVK-10P10266 1014 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 NEFHP12036 1026 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 CORO1AP31146 461 aaKnown RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 FOXN2P32314 431 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 ADRA1AP35348 466 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 CLCN4P51793 760 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 PDE1BQ01064 536 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 FAM133BQ5BKY9 247 aaKnown RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 C6orf89Q6UWU4 347 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 CHST9Q7L1S5 443 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 KCNMB4Q86W47 210 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 DENND1CQ8IV53 801 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 NDUFAF2Q8N183 169 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 ELMOD1Q8N336 334 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 TTC16Q8NEE8 873 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 GABPB2Q8TAK5 448 aaPredicted RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 ZNF419Q96HQ0 510 aaPredicted RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 TRPC7Q9HCX4 862 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 C20orf96Q9NUD7 363 aaPredicted RBP17.08■□□□□ 0.33
LDLR-206ENST00000557958 STARD13Q9Y3M8 1113 aa17.08■□□□□ 0.33
LDLR-206ENST00000557958 PRAMEF11O60813 436 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 STC2O76061 302 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ITGA2BP08514 1039 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 EPCAMP16422 314 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 TPH1P17752 444 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CRHR1P34998 444 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ETFBP38117 255 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ZNF235Q14590 738 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 LBRQ14739 615 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 ADGRF1Q5T601 910 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 RNF187Q5TA31 235 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 ZNF697Q5TEC3 545 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 PKN3Q6P5Z2 889 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CES3Q6UWW8 571 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CIR1Q86X95 450 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 UNC5BQ8IZJ1 945 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 FCRL3Q96P31 734 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 FAM111AQ96PZ2 611 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 POLR1EQ9GZS1 481 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 ZNF334Q9HCZ1 680 aaPredicted RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 MAN1C1Q9NR34 630 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CHRAC1Q9NRG0 131 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 SLC17A7Q9P2U7 560 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 ARL2BPQ9Y2Y0 163 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 DOCK4Q8N1I0 1966 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 NYNRINQ9P2P1 1898 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 RANBP2P49792 3224 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 TIMM44O43615 452 aa17.07■□□□□ 0.32
LDLR-206ENST00000557958 CLASP2O75122 1294 aaKnown RBP17.07■□□□□ 0.32
LDLR-206ENST00000557958 RFPL2O75678 378 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 119 ms