RNA–Protein interactions for RNA: ENST00000484581.6

VPS13A-211, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2 BASIC

Gene VPS13A, Length 1,155 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-211ENST00000484581 HECTD3Q5T447 861 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 CHST9Q7L1S5 443 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 TADA2BQ86TJ2 420 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.79□□□□□ -1.642e-6■■■■□ 23.7
VPS13A-211ENST00000484581 HSPH1Q92598 858 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 CCDC34Q96HJ3 373 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 CMTM3Q96MX0 182 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 FYTTD1Q96QD9 318 aaKnown RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 MMS19Q96T76 1030 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 AIFM2Q9BRQ8 373 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 TEX12Q9BXU0 123 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 CADM1Q9BY67 442 aaKnown RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 OR10A4Q9H209 315 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 R3HDMLQ9H3Y0 253 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 SLC32A1Q9H598 525 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 FBRSL1Q9HCM7 1045 aaKnown RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 CCDC177Q9NQR7 707 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 SERTAD4Q9NUC0 356 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 SPATS2LQ9NUQ6 558 aaKnown RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 TMEM248Q9NWD8 314 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 NCKIPSDQ9NZQ3 722 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 KIAA1456Q9P272 454 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 ADAMTS5Q9UNA0 930 aa4.79□□□□□ -1.64
VPS13A-211ENST00000484581 SIRT4Q9Y6E7 314 aaPredicted RBP4.79□□□□□ -1.64
VPS13A-211ENST00000484581 OR6C68A6NDL8 312 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 FYB1O15117 783 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ADAM20O43506 726 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 MCM3P25205 808 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 POU1F1P28069 291 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 FMO4P31512 558 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 CYP2C18P33260 490 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 CTNNA1P35221 906 aaKnown RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ZNF84P51523 738 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ELLP55199 621 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 CDH8P55286 799 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 FOXI1Q12951 378 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 CSTF3Q12996 717 aaKnown RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ATG9BQ674R7 924 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 SLC30A9Q6PML9 568 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 MDGA2Q7Z553 956 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 VSIG1Q86XK7 387 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 TICAM1Q8IUC6 712 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 SCML4Q8N228 414 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 GHDCQ8N2G8 530 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 EXD3Q8N9H8 876 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 SCAIQ8N9R8 606 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 KCTD6Q8NC69 237 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 CAGE1Q8TC20 777 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 TFAP2BQ92481 460 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 SLC9A6Q92581 669 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 PGAM5Q96HS1 289 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ABHD14AQ9BUJ0 271 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 EDEM3Q9BZQ6 932 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 TRIM2Q9C040 744 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 RABEP2Q9H5N1 569 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ENTPD7Q9NQZ7 604 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ASNSD1Q9NWL6 643 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 ARL15Q9NXU5 204 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 MRPL15Q9P015 296 aaKnown RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 MARCH4Q9P2E8 410 aaPredicted RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 INTS6Q9UL03 887 aaKnown RBP4.78□□□□□ -1.64
VPS13A-211ENST00000484581 MKLN1Q9UL63 735 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 DTX4Q9Y2E6 619 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 FAM169AQ9Y6X4 670 aa4.78□□□□□ -1.64
VPS13A-211ENST00000484581 FNDC1Q4ZHG4 1894 aaPredicted RBP4.77□□□□□ -1.65
VPS13A-211ENST00000484581 SPATA31A5Q5VU36 1347 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 SPATA31A7Q8IWB4 1347 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 A0A1W2PRG0 241 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 TMEM247A6NEH6 219 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 LRRC53A6NM62 1247 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 CDRT15L2A8MXV6 281 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 EIF3CLB5ME19 914 aaKnown RBP4.77□□□□□ -1.65
VPS13A-211ENST00000484581 TAF4O00268 1085 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 QSOX1O00391 747 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 TP73O15350 636 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 LIASO43766 372 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 ENTPD3O75355 529 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 ESRRBO95718 433 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 HSPA4LO95757 839 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 ADAP00813 363 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 HLA-DQA2P01906 255 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 RFPL3SP0C7P2 107 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 NDUFB7P17568 137 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 PTMSP20962 102 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 CD72P21854 359 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 PLA2G5P39877 138 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 EFNA5P52803 228 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 EEFSECP57772 596 aaKnown RBP4.77□□□□□ -1.65
VPS13A-211ENST00000484581 PSMC6P62333 389 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 CEBPZQ03701 1054 aaKnown RBP4.77□□□□□ -1.65
VPS13A-211ENST00000484581 NIPAL4Q0D2K0 466 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 MFSD13AQ14CX5 517 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 TAF11Q15544 211 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 BMP2KLQ5H9B9 411 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 AARS2Q5JTZ9 985 aaKnown RBP4.77□□□□□ -1.65
VPS13A-211ENST00000484581 GARNL3Q5VVW2 1013 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 ZNF804AQ7Z570 1209 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 ADGRA1Q86SQ6 560 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 FAM160B2Q86V87 743 aa4.77□□□□□ -1.65
VPS13A-211ENST00000484581 FAM110DQ8TAY7 271 aaPredicted RBP4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms