RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 PRNPP04156 253 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 KRT3P12035 628 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 ADRA1BP35368 520 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 ATP11AP98196 1134 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 OVGP1Q12889 678 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 CCDC14Q49A88 953 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 NEK5Q6P3R8 708 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 TRIM69Q86WT6 500 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 PHF13Q86YI8 300 aaPredicted RBP19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 EMC1Q8N766 993 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 SLC30A5Q8TAD4 765 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 CENPIQ92674 756 aaPredicted RBP19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 GATA6Q92908 595 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 SERAC1Q96JX3 654 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 SLC6A18Q96N87 628 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 C11orf70Q9BRQ4 267 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 TMEM121BQ9BXQ6 578 aaPredicted RBP19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 CEP44Q9C0F1 390 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 EBF2Q9HAK2 575 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 PREBQ9HCU5 417 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 TMPRSS4Q9NRS4 437 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 ADAM22Q9P0K1 906 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 ZNF212Q9UDV6 495 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 OR12D3Q9UGF7 316 aa19.52■□□□□ 0.72
CCDC28A-203ENST00000617445 KNTC1P50748 2209 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 FRYQ5TBA9 3013 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 A0A0D9SEW6 157 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 C1QTNF9BB2RNN3 333 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 H0Y8X5 98 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 SNAP91O60641 907 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 MAGEC1O60732 1142 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 C1QTNF9P0C862 333 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 CHRNA3P32297 505 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 RECQLP46063 649 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 CNTN1Q12860 1018 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 NCAPHQ15003 741 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 CLEC16AQ2KHT3 1053 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 ARTNQ5T4W7 220 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 AGBL4Q5VU57 503 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 NAPEPLDQ6IQ20 393 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 IQCHQ86VS3 1027 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 CHCHD4Q8N4Q1 142 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 OR2A12Q8NGT7 310 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 ELF4Q99607 663 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 GDF3Q9NR23 364 aa19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 TP53BP1Q12888 1972 aaPredicted RBP19.51■□□□□ 0.71
CCDC28A-203ENST00000617445 CHD5Q8TDI0 1954 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 A0A1B0GTQ1 180 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 A0A1W2PR77 199 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 SIGLEC16A6NMB1 481 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 BNIP3LO60238 219 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 RNGTTO60942 597 aaKnown RBP19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 RTN2O75298 545 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 MAPKAPK2P49137 400 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 GNA12Q03113 381 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 C1QBPQ07021 282 aaKnown RBP19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 PTP4A2Q12974 167 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 KCNT1Q5JUK3 1230 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 PPP1R2P3Q6NXS1 205 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 LAYNQ6UX15 382 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 APTXQ7Z2E3 356 aaKnown RBP19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 OXR1Q8N573 874 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 MFSD2AQ8NA29 543 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 C3orf20Q8ND61 904 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 PCDHB18PQ96TA0 734 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 SPON2Q9BUD6 331 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 SELENOOQ9BVL4 669 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 ERVMER34-1Q9H9K5 563 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 DYRK4Q9NR20 520 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 ARHGAP20Q9P2F6 1191 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 KLK13Q9UKR3 277 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 MYO6Q9UM54 1294 aa19.5■□□□□ 0.71
CCDC28A-203ENST00000617445 DOCK9Q9BZ29 2069 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 FAM170AA1A519 330 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 ANKRD62A6NC57 917 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 TLR4O00206 839 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 CBX4O00257 560 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 KCNK3O14649 394 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 SMAD6O43541 496 aaKnown RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 TNFSF14O43557 240 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 ZMPSTE24O75844 475 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 WNT1P04628 370 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 FERP16591 822 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 RHOQP17081 205 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 RRM1P23921 792 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 ARRB1P49407 418 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 METAP1P53582 386 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 GEMIN4P57678 1058 aaKnown RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 TYRO3Q06418 890 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 CDO1Q16878 200 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 C15orf59Q2T9L4 293 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 SETMARQ53H47 684 aaPredicted RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 MANEALQ5VSG8 457 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 C22orf39Q6P5X5 142 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 PLPP6Q8IY26 295 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 PCDH20Q8N6Y1 951 aaKnown RBP19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 OR7D4Q8NG98 312 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 JOSD2Q8TAC2 188 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 NTAN1Q96AB6 310 aa19.49■□□□□ 0.71
CCDC28A-203ENST00000617445 PPP1R16AQ96I34 528 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms