RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 VPS36Q86VN1 386 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 MINDY1Q8N5J2 469 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 RNF214Q8ND24 703 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 PIP4K2CQ8TBX8 421 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 CCDC114Q96M63 670 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 TNKS2Q9H2K2 1166 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 NDFIP2Q9NV92 336 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 SARDHQ9UL12 918 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 FZD10Q9ULW2 581 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 CAPN11Q9UMQ6 739 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 LUC7L2Q9Y383 392 aaKnown RBP17.01■□□□□ 0.31
SREBF1-219ENST00000580540 LAMA1P25391 3075 aa17.01■□□□□ 0.31
SREBF1-219ENST00000580540 CNOT1A5YKK6 2376 aaKnown RBP17■□□□□ 0.31
SREBF1-219ENST00000580540 MCF2LO15068 1137 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 OPHN1O60890 802 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 KCNK5O95279 499 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 EPHB2P29323 1055 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 L1CAMP32004 1257 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 RECQLP46063 649 aaPredicted RBP17■□□□□ 0.31
SREBF1-219ENST00000580540 MAPKAPK2P49137 400 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 CSNK1EP49674 416 aaKnown RBP17■□□□□ 0.31
SREBF1-219ENST00000580540 NOVA1P51513 510 aaKnown RBP17■□□□□ 0.31
SREBF1-219ENST00000580540 SCAPQ12770 1279 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 GRIK2Q13002 908 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 PSAPL1Q6NUJ1 521 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 NLRP14Q86W24 1093 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 EPAS1Q99814 870 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 TMEM248Q9NWD8 314 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 GPATCH2LQ9NWQ4 482 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 PCSK1NQ9UHG2 260 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 ADAMTS1Q9UHI8 967 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 FZD4Q9ULV1 537 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 ACTL7AQ9Y615 435 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 BZW2Q9Y6E2 419 aaKnown RBP17■□□□□ 0.31
SREBF1-219ENST00000580540 SLCO1B1Q9Y6L6 691 aa17■□□□□ 0.31
SREBF1-219ENST00000580540 CACNA1AO00555 2505 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3DA0A087WVF3 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3IA0A087WXS9 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3EA0A087X179 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3KA0A087X1G2 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 A0A1B0GVT2 93 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3FA6NER0 549 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TMEM191CA6NGB0 347 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3LB9A6J9 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 KPNA3O00505 521 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 RAMP2O60895 175 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 ZMPSTE24O75844 475 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 RNF8O76064 485 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 SERPING1P05155 500 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3HP0C7X1 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 CD27P26842 260 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 CHRNA3P32297 505 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 ETFBP38117 255 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 CLCN6P51797 869 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 SLC20A2Q08357 652 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 CNTN1Q12860 1018 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 POLD3Q15054 466 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 HGSNATQ68CP4 663 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3GQ6DHY5 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3CQ6IPX1 549 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 C22orf39Q6P5X5 142 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 LEKR1Q6ZMV7 388 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TBC1D3Q8IZP1 549 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 CHST14Q8NCH0 376 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 OR2A12Q8NGT7 310 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 OR2T34Q8NGX1 318 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 SYN2Q92777 582 aaPredicted RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 ARHGEF2Q92974 986 aaKnown RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 IQCDQ96DY2 449 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TRIM11Q96F44 468 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 TRIM7Q9C029 511 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 PPM1HQ9ULR3 514 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 HPCAL4Q9UM19 191 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 FCF1Q9Y324 198 aaKnown RBP16.99■□□□□ 0.31
SREBF1-219ENST00000580540 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.99■□□□□ 0.311e-6■■□□□ 12.3
SREBF1-219ENST00000580540 SCINQ9Y6U3 715 aa16.99■□□□□ 0.31
SREBF1-219ENST00000580540 GIPC1O14908 333 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 ALOX15BO15296 676 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 CBFA2T2O43439 604 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 GYPCP04921 128 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 IGHV4-34P06331 123 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 MYBL1P10243 752 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 CASP14P31944 242 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 DRD3P35462 400 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 SERPINH1P50454 418 aaKnown RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 AFF3P51826 1226 aaKnown RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 ADPRHP54922 357 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 AIF1P55008 147 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 ARF5P84085 180 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 TEAD4Q15561 434 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 ADAT2Q7Z6V5 191 aaKnown RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 RYBPQ8N488 228 aaPredicted RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 DEFB124Q8NES8 71 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 C1orf216Q8TAB5 229 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 GRIN3AQ8TCU5 1115 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 ACE2Q9BYF1 805 aaPredicted RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 MAGEH1Q9H213 219 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 DHX35Q9H5Z1 703 aaKnown RBP16.98■□□□□ 0.31
SREBF1-219ENST00000580540 RETREG1Q9H6L5 497 aa16.98■□□□□ 0.31
SREBF1-219ENST00000580540 CATSPERBQ9H7T0 1116 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms