RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CAMK1Q14012 370 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ANO4Q32M45 955 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC25A52Q3SY17 297 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 TCEAL5Q5H9L2 206 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 C11orf63Q6NUN7 778 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 CCDC137Q6PK04 289 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 CCDC149Q6ZUS6 474 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 LIMS2Q7Z4I7 341 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SATL1Q86VE3 508 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 RAVER1Q8IY67 606 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PPP2R3CQ969Q6 453 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PBKQ96KB5 322 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PKMYT1Q99640 499 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PFDN4Q9NQP4 134 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FBXO6Q9NRD1 293 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SSX2IPQ9Y2D8 614 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FAM72CH0Y354 149 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 DDX3YO15523 660 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PEX1O43933 1283 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 DAB1O75553 588 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC1A1P43005 524 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 MAPK10P53779 464 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 TEAD2Q15562 447 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FAM72AQ5TYM5 149 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FAM72DQ6L9T8 149 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 LRRC8BQ6P9F7 803 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 LRRC74BQ6ZQY2 392 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 KDELC2Q7Z4H8 507 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ANKS1BQ7Z6G8 1248 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FAM72BQ86X60 149 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 TTC17Q96AE7 1141 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 HSPBAP1Q96EW2 488 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 HERPUD2Q9BSE4 406 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 OR12D3Q9UGF7 316 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PHTF1Q9UMS5 762 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 R3HDM2Q9Y2K5 976 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 RWDD3Q9Y3V2 267 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 CPQQ9Y646 472 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 COL6A3P12111 3177 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 DPYSL4O14531 572 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 NDUFB5O43674 189 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FOXD2O60548 495 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 CIB2O75838 187 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 GABRB2P47870 512 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 BNIP1Q12981 228 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PABPC1LQ4VXU2 614 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FAXCQ5TGI0 409 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 FYB2Q5VWT5 728 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 TPGS2Q68CL5 300 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 DARS2Q6PI48 645 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 SPOCD1Q6ZMY3 1216 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ITIH5Q86UX2 942 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ZDHHC17Q8IUH5 632 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 WDR60Q8WVS4 1066 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ATXN2LQ8WWM7 1075 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 KCTD13Q8WZ19 329 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 HES6Q96HZ4 224 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 C8orf48Q96LL4 319 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 ERP44Q9BS26 406 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 DCUN1D5Q9BTE7 237 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 RNF38Q9H0F5 515 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 LRCH1Q9Y2L9 728 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 PCDHA3Q9Y5H8 950 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 NFS1Q9Y697 457 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 COL4A6Q14031 1691 aa8.86□□□□□ -0.99
LIMCH1-209ENST00000509277 TNFRSF10BO14763 440 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 PAGE1O75459 146 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 TJP3O95049 919 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 RHOP08100 348 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 TFPTP0C1Z6 253 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CCR1P32246 355 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 PGM1P36871 562 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 HARS2P49590 506 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 INHBCP55103 352 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ADARP55265 1226 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 AP1B1Q10567 949 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 GRIN2CQ14957 1233 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 RABGAP1LQ5R372 815 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ARHGEF18Q6ZSZ5 1173 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 PYDC1Q8WXC3 89 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 FCRL2Q96LA5 508 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 NR1H4Q96RI1 486 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 GRIP2Q9C0E4 1043 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 LIN28AQ9H9Z2 209 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CSNK1G1Q9HCP0 422 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 HEMK1Q9Y5R4 338 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 EXOC1LA0A1B0GW35 172 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 H3BNC9 293 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 COCHO43405 550 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 CLASP2O75122 1294 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 PDE5AO76074 875 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 KDELR1P24390 212 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 RPL21P46778 160 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ITKQ08881 620 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 SLC13A5Q86YT5 568 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 TP53INP2Q8IXH6 220 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 LGI2Q8N0V4 545 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 NAT16Q8N8M0 369 aa8.85□□□□□ -0.99
LIMCH1-209ENST00000509277 ZFYVE19Q96K21 471 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms