RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PLD4Q96BZ4 506 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 IGSF21Q96ID5 467 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 GAL3ST4Q96RP7 486 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CCSER1Q9C0I3 900 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 UPF3AQ9H1J1 476 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PABPC3Q9H361 631 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 WDR26Q9H7D7 661 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 UBP1Q9NZI7 540 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PAK5Q9P286 719 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CMPK1P30085 196 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CAPSQ13938 189 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 ARHGAP40Q5TG30 622 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CACHD1Q5VU97 1274 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 HIBCHQ6NVY1 386 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 AHI1Q8N157 1196 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 RXFP2Q8WXD0 754 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 UBE2E3Q969T4 207 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 TTC17Q96AE7 1141 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 AGO1Q9UL18 857 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PHF24Q9UPV7 400 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 FAM86B1E9PN63 330 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CLDN5O00501 218 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 DNAJC8O75937 253 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 FAM86B2P0C5J1 330 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CASP4P49662 377 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 GUCY2DQ02846 1103 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 ABRQ12979 859 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 EFTUD2Q15029 972 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 PDK2Q15119 407 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 LRRC23Q53EV4 343 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 INTS6LQ5JSJ4 861 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 C9orf57Q5W0N0 161 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 LRRC74BQ6ZQY2 392 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 CRLF3Q8IUI8 442 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 LPIN3Q9BQK8 851 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 KLHL14Q9P2G3 628 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SORCS3Q9UPU3 1222 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 COQ6Q9Y2Z9 468 aa9.35□□□□□ -0.91
LIMCH1-202ENST00000381753 SMIM28A0A1B0GU29 152 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 A0A1W2PQ67 120 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 DCTN3O75935 186 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CCKBRP32239 447 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 RFX5P48382 616 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ABCE1P61221 599 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MC1RQ01726 317 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SLC44A4Q53GD3 710 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 FNBP1LQ5T0N5 605 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 GALNT7Q86SF2 657 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ATP6V1C2Q8NEY4 427 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 AP2M1Q96CW1 435 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EXOC2Q96KP1 924 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ACO2Q99798 780 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 FAIM2Q9BWQ8 316 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CTNNAL1Q9UBT7 734 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ZFP37Q9Y6Q3 630 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 TTLL8A6PVC2 850 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MDM4O15151 490 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 GMFGO60234 142 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 FKBP9O95302 570 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 DRD1P21728 446 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 PDE1CQ14123 709 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CRY1Q16526 586 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CBWD6Q4V339 395 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 FKBP9P1Q75LS8 142 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 DAGLBQ8NCG7 672 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 TMC2Q8TDI7 906 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 SHC3Q92529 594 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 KCNJ9Q92806 393 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ZHX1-C8orf76Q96EF9 292 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 C12orf42Q96LP6 360 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EPS8L2Q9H6S3 715 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 OSGEPQ9NPF4 335 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MCM8Q9UJA3 840 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EIF3LQ9Y262 564 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EVPLLA8MZ36 301 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 POP4O95707 220 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CD72P21854 359 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 NEK3P51956 506 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 TRIM61Q5EBN2 209 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ERMARDQ5T6L9 678 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 RASGRP2Q7LDG7 609 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 RAB43Q86YS6 212 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CDYL2Q8N8U2 506 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 HEXDCQ8WVB3 486 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EDAQ92838 391 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 DPY30Q9C005 99 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MAF1Q9H063 256 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 C2CD2Q9Y426 696 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CAPN7Q9Y6W3 813 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 LTBP4Q8N2S1 1624 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 DUX1O43812 170 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 MAP3K6O95382 1288 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 ABOP16442 354 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 HLA-DPA1P20036 260 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 OTX2P32243 289 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 EFL1Q7Z2Z2 1120 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 RPLP0P6Q8NHW5 317 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 AGR3Q8TD06 166 aa9.34□□□□□ -0.91
LIMCH1-202ENST00000381753 CYB5D2Q8WUJ1 264 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms