RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 VASH1Q7L8A9 365 aaPredicted RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 SLC44A1Q8WWI5 657 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ERLEC1Q96DZ1 483 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 RBM18Q96H35 190 aaKnown RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 CIB1Q99828 191 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 AIFM2Q9BRQ8 373 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 SHCBP1LQ9BZQ2 653 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 IL1RAPL1Q9NZN1 696 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 SELENONQ9NZV5 590 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 KIAA1551Q9HCM1 1747 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ZNF541Q9H0D2 1346 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 M0QYT0 321 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 GRIN3BO60391 1043 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ERBB2P04626 1255 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 RALBP11234 206 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 TCF4P15884 667 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 IVDP26440 423 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 PNPLA4P41247 253 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 NOMO1Q15155 1222 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 KIZQ2M2Z5 673 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ELMSAN1Q6PJG2 1045 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 FAM183BPQ6ZVS7 135 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 XYLT1Q86Y38 959 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 HTR3CQ8WXA8 447 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 FSD1LQ9BXM9 530 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 SIK2Q9H0K1 926 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 FBXO6Q9NRD1 293 aaPredicted RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 C20orf96Q9NUD7 363 aaPredicted RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 FETUBQ9UGM5 382 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ATP11BQ9Y2G3 1177 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 RWDD3Q9Y3V2 267 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 GJB1P08034 283 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 TMEM11P17152 192 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 STT3AP46977 705 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 TAF6P49848 677 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 HIRAP54198 1017 aaPredicted RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 MGAT5Q09328 741 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 BST2Q10589 180 aaKnown RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 USP10Q14694 798 aaKnown RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 TRIP10Q15642 601 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 C6orf132Q5T0Z8 1188 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 N4BP2L1Q5TBK1 243 aaPredicted RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 TXNRD3NBQ6F5E7 133 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 KYAT3Q6YP21 454 aaKnown RBP10.61□□□□□ -0.71
LIG1-220ENST00000601091 LRRTM3Q86VH5 581 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 NIPA2Q8N8Q9 360 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 SLC7A14Q8TBB6 771 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 RNF139Q8WU17 664 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 WNK4Q96J92 1243 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 TASP1Q9H6P5 420 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 GID8Q9NWU2 228 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 GTSE1Q9NYZ3 720 aa10.61□□□□□ -0.71
LIG1-220ENST00000601091 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 H3BRB1 525 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 NEMP1O14524 444 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 FKBP6O75344 327 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 CD48P09326 243 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 NCAM1P13591 858 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 BTF3P20290 206 aaKnown RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 AMPD1P23109 780 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 THOP1P52888 689 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 UGP2Q16851 508 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 CTC1Q2NKJ3 1217 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 HSDL1Q3SXM5 330 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 SV2CQ496J9 727 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 POTEAQ6S8J7 498 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 LRRC74BQ6ZQY2 392 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 SLC25A41Q8N5S1 370 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 PSD4Q8NDX1 1056 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 MCUQ8NE86 351 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 RFWD2Q8NHY2 731 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 AFG1LQ8WV93 481 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 HDAC11Q96DB2 347 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 OLFM3Q96PB7 478 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 SNRNP25Q9BV90 132 aaKnown RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 TUT1Q9H6E5 874 aaKnown RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 LRRC40Q9H9A6 602 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 EBF2Q9HAK2 575 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 CASS4Q9NQ75 786 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 STARD7Q9NQZ5 370 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 RRN3Q9NYV6 651 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 VANGL2Q9ULK5 521 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ARHGAP26Q9UNA1 814 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 STYXL1Q9Y6J8 313 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 A0A0J9YVX5 310 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 RRN3P2A6NIE6 340 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 AIM2O14862 343 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ATF6P18850 670 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 DSG1Q02413 1049 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 SIGIRRQ6IA17 410 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ZCCHC23Q6ZST2 131 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 PEX13Q92968 403 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ZNF566Q969W8 418 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 KLRG1Q96E93 195 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 ILKAPQ9H0C8 392 aaPredicted RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 PDP2Q9P2J9 529 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 SHANK3Q9BYB0 1731 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 WDR27A2RRH5 827 aa10.6□□□□□ -0.71
LIG1-220ENST00000601091 DYNC1LI2O43237 492 aaPredicted RBP10.6□□□□□ -0.71
LIG1-220ENST00000601091 NOL3O60936 208 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms