RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 RETP07949 1114 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 MAN1A1P33908 653 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 SSR1P43307 286 aaKnown RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 YBEYP58557 167 aaPredicted RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 RPL6Q02878 288 aaKnown RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 MAP7D1Q3KQU3 841 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PARP15Q460N3 678 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PLK5Q496M5 336 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 BOLA3Q53S33 107 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 SPDYCQ5MJ68 293 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 FAM72AQ5TYM5 149 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 FAM72DQ6L9T8 149 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 LPCAT2Q7L5N7 544 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 FAM72BQ86X60 149 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 ZNF354CQ86Y25 554 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 TMTC1Q8IUR5 882 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PYROXD2Q8N2H3 581 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 SH2D3CQ8N5H7 860 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 ATP11CQ8NB49 1132 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 OR52K2Q8NGK3 314 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 RFFLQ8WZ73 363 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 OR8D1Q8WZ84 308 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PEBP4Q96S96 227 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 SPON2Q9BUD6 331 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PACSIN1Q9BY11 444 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 PRSS16Q9NQE7 514 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 GPATCH2LQ9NWQ4 482 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 IMPACTQ9P2X3 320 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 ZNF212Q9UDV6 495 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 DNAI1Q9UI46 699 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 CYP8B1Q9UNU6 501 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 NEU3Q9UQ49 428 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 FARP1Q9Y4F1 1045 aaPredicted RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 PCDHGA5Q9Y5G8 931 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 OR51B4Q9Y5P0 310 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 EP300Q09472 2414 aaPredicted RBP13.3□□□□□ -0.28
CLK3-224ENST00000568605 GVINP1Q7Z2Y8 2422 aa13.3□□□□□ -0.28
CLK3-224ENST00000568605 DOCK9Q9BZ29 2069 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 IGHV1OR15-9A0A0B4J2B8 117 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 A0A0D9SEW6 157 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 WASH4PA8MWX3 477 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 TTC34A8MYJ7 566 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 ALOX15BO15296 676 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 ATP9BO43861 1147 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 PROSCO94903 275 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 EPN2O95208 641 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 ADH1BP00325 375 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 CD6P30203 668 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 RECQLP46063 649 aaPredicted RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 NUMBP49757 651 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 SERPINH1P50454 418 aaKnown RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 SLC20A2Q08357 652 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 POLD3Q15054 466 aaPredicted RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 DPYSL2Q16555 572 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 SMTNL2Q2TAL5 461 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 OR7D4Q8NG98 312 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 RLN3Q8WXF3 142 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 BTBD6Q96KE9 485 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 PSMB7Q99436 277 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 DUSP15Q9H1R2 295 aaPredicted RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 SLC6A17Q9H1V8 727 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 RSPH9Q9H1X1 276 aaPredicted RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.29□□□□□ -0.28
CLK3-224ENST00000568605 USP36Q9P275 1121 aaKnown RBP13.29□□□□□ -0.28
CLK3-224ENST00000568605 SLCO3A1Q9UIG8 710 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 INVSQ9Y283 1065 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 NCKAP1Q9Y2A7 1128 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 ZNF292O60281 2723 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 CACNA1EQ15878 2313 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 LRRK1Q38SD2 2015 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 TRPM6Q9BX84 2022 aa13.29□□□□□ -0.28
CLK3-224ENST00000568605 C1QTNF3-AMACRE9PGA6 284 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 DCLK1O15075 740 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 SNAP91O60641 907 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 IGLV3-19P01714 112 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 C7P10643 843 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 SRCP12931 536 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 BCKDHBP21953 392 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 SERPINB6P35237 376 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 ARHGAP25P42331 645 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 HCAR3P49019 387 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 DHPSP49366 369 aaPredicted RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 TPMTP51580 245 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 RPS14P62263 151 aaKnown RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 KRT81Q14533 505 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 DLG2Q15700 870 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 CST6Q15828 149 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 C9orf64Q5T6V5 341 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 FAM46CQ5VWP2 391 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 C22orf39Q6P5X5 142 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 RFX8Q6ZV50 586 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 USP30Q70CQ3 517 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 CYP2U1Q7Z449 544 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 TXLNBQ8N3L3 684 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 ARFGAP1Q8N6T3 406 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 HSPH1Q92598 858 aa13.28□□□□□ -0.28
CLK3-224ENST00000568605 ARHGEF2Q92974 986 aaKnown RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 KCTD15Q96SI1 283 aaPredicted RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 ACE2Q9BYF1 805 aaPredicted RBP13.28□□□□□ -0.28
CLK3-224ENST00000568605 CEP44Q9C0F1 390 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms