RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 MAML1Q92585 1016 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 TEKT5Q96M29 485 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 IL12RB2Q99665 862 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 IGSF9Q9P2J2 1179 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 TRHDEQ9UKU6 1024 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 ATP8A1Q9Y2Q0 1164 aa19.02■□□□□ 0.63
CLN3-206ENST00000360019 APRTP07741 180 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 RHOCP08134 193 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 TCF3P15923 654 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 ADAM15Q13444 863 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 UAP1Q16222 522 aaPredicted RBP19.01■□□□□ 0.63
CLN3-206ENST00000360019 PARP6Q2NL67 630 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 ZNF354CQ86Y25 554 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 OR7D4Q8NG98 312 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 BHMTQ93088 406 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 FATE1Q969F0 183 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 GORASP1Q9BQQ3 440 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 MAGEH1Q9H213 219 aa19.01■□□□□ 0.63
CLN3-206ENST00000360019 ILVBLA1L0T0 632 aa19■□□□□ 0.63
CLN3-206ENST00000360019 FSHRP23945 695 aa19■□□□□ 0.63
CLN3-206ENST00000360019 HOXD9P28356 352 aaPredicted RBP19■□□□□ 0.63
CLN3-206ENST00000360019 FDFT1P37268 417 aa19■□□□□ 0.63
CLN3-206ENST00000360019 FSCBQ5H9T9 825 aa19■□□□□ 0.63
CLN3-206ENST00000360019 CARNMT1Q8N4J0 409 aa19■□□□□ 0.63
CLN3-206ENST00000360019 WFDC5Q8TCV5 224 aa19■□□□□ 0.63
CLN3-206ENST00000360019 SP110Q9HB58 689 aa19■□□□□ 0.63
CLN3-206ENST00000360019 LMCD1Q9NZU5 365 aa19■□□□□ 0.63
CLN3-206ENST00000360019 CLEC1BQ9P126 229 aa19■□□□□ 0.63
CLN3-206ENST00000360019 HPCAL4Q9UM19 191 aa19■□□□□ 0.63
CLN3-206ENST00000360019 TYW5A2RUC4 315 aaKnown RBP19■□□□□ 0.63
CLN3-206ENST00000360019 SMAPO00193 183 aa19■□□□□ 0.63
CLN3-206ENST00000360019 LUC7L3O95232 432 aaKnown RBP19■□□□□ 0.63
CLN3-206ENST00000360019 HSD17B3P37058 310 aa19■□□□□ 0.63
CLN3-206ENST00000360019 GRIN2CQ14957 1233 aa19■□□□□ 0.63
CLN3-206ENST00000360019 UBAP2Q5T6F2 1119 aaKnown RBP19■□□□□ 0.63
CLN3-206ENST00000360019 TPGS1Q6ZTW0 290 aa19■□□□□ 0.63
CLN3-206ENST00000360019 DDI1Q8WTU0 396 aa19■□□□□ 0.63
CLN3-206ENST00000360019 FGF13Q92913 245 aa19■□□□□ 0.63
CLN3-206ENST00000360019 EXOC4Q96A65 974 aa19■□□□□ 0.63
CLN3-206ENST00000360019 LRRC3BQ96PB8 259 aa19■□□□□ 0.63
CLN3-206ENST00000360019 FOXP3Q9BZS1 431 aa19■□□□□ 0.63
CLN3-206ENST00000360019 GBA3Q9H227 469 aa19■□□□□ 0.63
CLN3-206ENST00000360019 H0Y626 953 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 ATP8B1O43520 1251 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 PRAMEF11O60813 436 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 NFKB1P19838 968 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 TPSB2P20231 275 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 WEE1P30291 646 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 PMS2P54278 862 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 IL10RBQ08334 325 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 SLC10A7Q0GE19 358 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 HNRNPDQ14103 355 aaKnown RBP18.99■□□□□ 0.63
CLN3-206ENST00000360019 SLMAPQ14BN4 828 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 TPSAB1Q15661 275 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 ANO4Q32M45 955 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 MPPE1Q53F39 396 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 FNBP1LQ5T0N5 605 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 MPP7Q5T2T1 576 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 RNF43Q68DV7 783 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 GET4Q7L5D6 327 aaPredicted RBP18.99■□□□□ 0.63
CLN3-206ENST00000360019 PABPC5Q96DU9 382 aaKnown RBP18.99■□□□□ 0.63
CLN3-206ENST00000360019 RSPRY1Q96DX4 576 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 RBM15Q96T37 977 aaKnown RBP eCLIP18.99■□□□□ 0.63
CLN3-206ENST00000360019 TSPYL1Q9H0U9 437 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 EPB41L4BQ9H329 900 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 SEMA4AQ9H3S1 761 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 PDFQ9HBH1 243 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 RBM22Q9NW64 420 aaKnown RBP eCLIP18.99■□□□□ 0.63
CLN3-206ENST00000360019 PLK2Q9NYY3 685 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 RSPH14Q9UHP6 348 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 NUP210Q8TEM1 1887 aaPredicted RBP18.99■□□□□ 0.63
CLN3-206ENST00000360019 PRUNE2Q8WUY3 3088 aa18.99■□□□□ 0.63
CLN3-206ENST00000360019 TBX10O75333 385 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 HLA-DQB2P05538 268 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 DLX2Q07687 328 aaPredicted RBP18.98■□□□□ 0.63
CLN3-206ENST00000360019 MTM1Q13496 603 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 HIF1AQ16665 826 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 FYB2Q5VWT5 728 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 IL31Q6EBC2 164 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 LEKR1Q6ZMV7 388 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 CELF5Q8N6W0 485 aaKnown RBP18.98■□□□□ 0.63
CLN3-206ENST00000360019 ACE2Q9BYF1 805 aaPredicted RBP18.98■□□□□ 0.63
CLN3-206ENST00000360019 LINC00597Q9H2U6 94 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 CDC42EP4Q9H3Q1 356 aaKnown RBP18.98■□□□□ 0.63
CLN3-206ENST00000360019 CLEC4EQ9ULY5 219 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 COLQQ9Y215 455 aaPredicted RBP18.98■□□□□ 0.63
CLN3-206ENST00000360019 MTCH2Q9Y6C9 303 aa18.98■□□□□ 0.63
CLN3-206ENST00000360019 A0A1W2PPC1 479 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 E7EVH7 732 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 CACNG3O60359 315 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 HOXB8P17481 243 aaPredicted RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 GLDCP23378 1020 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 VIPR2P41587 438 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 CDH18Q13634 790 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 ADGRE1Q14246 886 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 FASTKD3Q14CZ7 662 aaKnown RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 MSS51Q4VC12 460 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 FAM78AQ5JUQ0 283 aa18.97■□□□□ 0.63
CLN3-206ENST00000360019 RNF219Q5W0B1 726 aaPredicted RBP18.97■□□□□ 0.63
CLN3-206ENST00000360019 ITPRIPL1Q6GPH6 555 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms