RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 COX7A2P14406 83 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 DPP3Q9NY33 737 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 OPTCQ9UBM4 332 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CYP17A1P05093 508 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CCNYL3P0C7X3 344 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 GIMD1P0DJR0 217 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 RRM1P23921 792 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 EMC2Q15006 297 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 RNF180Q86T96 592 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 PACS2Q86VP3 889 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 MKNK1Q9BUB5 465 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 AVILO75366 819 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TYMPP19971 482 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 IL18Q14116 193 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ADGRG2Q8IZP9 1017 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 CBWD1Q9BRT8 395 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 CELF4Q9BZC1 486 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ARMCX1Q9P291 453 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 CASZ1Q86V15 1759 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GCATO75600 419 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 APOL3O95236 402 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 RARGP13631 454 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ATF4P18848 351 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 HOXC8P31273 242 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SCNN1BP51168 640 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ACOX1Q15067 660 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 Q4G0T1 1027 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TPCN2Q8NHX9 752 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 UBA3Q8TBC4 463 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 HLA-DRAP01903 254 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 HOXB8P17481 243 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GPD2P43304 727 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TMPRSS11AQ6ZMR5 421 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF557Q8N988 423 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 KAT2BQ92831 832 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PAFAH2Q99487 392 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SLC6A15Q9H2J7 730 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SAR1AQ9NR31 198 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 MED11Q9P086 117 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 RFX7Q2KHR2 1363 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 LSM1O15116 133 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ECHS1P30084 290 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PLET1Q6UQ28 207 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GPR182O15218 404 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SEC24CP53992 1094 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PAPD7Q5XG87 772 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SRBD1Q8N5C6 995 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 INO80EQ8NBZ0 244 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TMIEQ8NEW7 156 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SUN5Q8TC36 379 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 AIFM3Q96NN9 605 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PNMA5Q96PV4 448 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PARK7Q99497 189 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GRIP2Q9C0E4 1043 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 CCDC167Q9P0B6 97 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 NR2F6P10588 404 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PTCD3Q96EY7 689 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 VPS4AQ9UN37 437 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TEX33O43247 280 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 AKAP8O43823 692 aaKnown RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 NR4A1P22736 598 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GP5P40197 560 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 RGS8P57771 180 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 IRGCQ6NXR0 463 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 GALNTL5Q7Z4T8 443 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 OR2L3Q8NG85 312 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 BHMTQ93088 406 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 TMEM143Q96AN5 459 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 PHF21BQ96EK2 531 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 ACE2Q9BYF1 805 aaPredicted RBP14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 LY9Q9HBG7 655 aa14.13□□□□□ -0.15
CCDC88A-201ENST00000263630 SLC28A1O00337 649 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 BPNT1O95861 308 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 IL18R1Q13478 541 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 HBP1O60381 514 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 MGAT5Q09328 741 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 BPIFB6Q8NFQ5 453 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 ANKS1AQ92625 1134 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 MED28Q9H204 178 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 IFT46Q9NQC8 304 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 TBX3O15119 743 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 SERPINB7O75635 380 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 PTGS2P35354 604 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 MBTD1Q05BQ5 628 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 PIGKQ92643 395 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 TBATAQ96M53 351 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 ARL5CA6NH57 179 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 LHX1P48742 406 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 TAS2R41P59536 307 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 SHQ1Q6PI26 577 aaKnown RBP14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF518BQ9C0D4 1074 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 MTMR12Q9C0I1 747 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 MARCH7Q9H992 704 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 NT5MQ9NPB1 228 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.12□□□□□ -0.153e-7■■■■□ 23.2
CCDC88A-201ENST00000263630 NOS1APO75052 506 aaPredicted RBP14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 CASP1P29466 404 aa14.12□□□□□ -0.15
CCDC88A-201ENST00000263630 HGH1Q9BTY7 390 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms