RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 PCDHA11Q9Y5I1 949 aa11.91□□□□□ -0.5
LINC00538-201ENST00000626109 TMEM189-UBE2V1I3L0A0 370 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 NRP1O14786 923 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 STAU1O95793 577 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ASS1P00966 412 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 GALTP07902 379 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 POU2F2P09086 479 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 MYBL1P10243 752 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 CHRNB2P17787 502 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TFEBP19484 476 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ATP5DP30049 168 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 SLC1A1P43005 524 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 BPIFB4P59827 614 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 NOP14P78316 857 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 FMO1Q01740 532 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 DEUP1Q05D60 604 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ACTN3Q08043 901 aaPredicted RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 PCBP2Q15366 365 aaKnown RBP eCLIP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TAF12Q16514 161 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ZNF667Q5HYK9 610 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ERMARDQ5T6L9 678 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 KCNT2Q6UVM3 1135 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 C6orf15Q6UXA7 325 aaPredicted RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TRMT10CQ7L0Y3 403 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 ZNF677Q86XU0 584 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 GRK7Q8WTQ7 553 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 KRT35Q92764 455 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 XPO6Q96QU8 1125 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TRIT1Q9H3H1 467 aaKnown RBP11.9□□□□□ -0.5
LINC00538-201ENST00000626109 LRRC19Q9H756 370 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TCF7L1Q9HCS4 588 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 TBC1D29Q9UFV1 150 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 RWDD3Q9Y3V2 267 aa11.9□□□□□ -0.5
LINC00538-201ENST00000626109 A0A1W2PPH5 198 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 LCHNA4D1U4 455 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 NEMP1O14524 444 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 TSC22D2O75157 780 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 SIN3BO75182 1162 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 TADA2AO75478 443 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 PYGMP11217 842 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 HDCP19113 662 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 PPM1AP35813 382 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 RPL21P46778 160 aaKnown RBP11.9□□□□□ -0.51
LINC00538-201ENST00000626109 RPIAP49247 311 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 CD83Q01151 205 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 SLC29A2Q14542 456 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 TAF5Q15542 800 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 RAB30Q15771 203 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 SCARA3Q6AZY7 606 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 ZDHHC24Q6UX98 284 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 SLC47A2Q86VL8 602 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 AVL9Q8NBF6 648 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 COLGALT1Q8NBJ5 622 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 GALNT6Q8NCL4 622 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 C3orf58Q8NDZ4 430 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 OR6C4Q8NGE1 309 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 HASPINQ8TF76 798 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 ART4Q93070 314 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 FUBP3Q96I24 572 aaKnown RBP eCLIP11.9□□□□□ -0.51
LINC00538-201ENST00000626109 ACAT2Q9BWD1 397 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 XYLT2Q9H1B5 865 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 NSMCE4AQ9NXX6 385 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 GRHL1Q9NZI5 618 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 CNOT8Q9UFF9 292 aaKnown RBP11.9□□□□□ -0.51
LINC00538-201ENST00000626109 MSRAQ9UJ68 235 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 PTBP2Q9UKA9 531 aaKnown RBP11.9□□□□□ -0.51
LINC00538-201ENST00000626109 PCDHB12Q9Y5F1 795 aa11.9□□□□□ -0.51
LINC00538-201ENST00000626109 ARHGEF37A1IGU5 675 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 KPNA7A9QM74 516 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 RASGRF2O14827 1237 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 THAP12O43422 761 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 LTFP02788 710 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 ITIH2P19823 946 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 HNRNPH1P31943 449 aaKnown RBP11.89□□□□□ -0.51
LINC00538-201ENST00000626109 PBX3P40426 434 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 MMP13P45452 471 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 GSK3AP49840 483 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 LILRA4P59901 499 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 GCNT1Q02742 428 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 CAV1Q03135 178 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 ANO4Q32M45 955 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 WDR72Q3MJ13 1102 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 GPR139Q6DWJ6 353 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 SPOPLQ6IQ16 392 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 PPP1R2P3Q6NXS1 205 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 ARHGAP11AQ6P4F7 1023 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 CHST15Q7LFX5 561 aaPredicted RBP11.89□□□□□ -0.51
LINC00538-201ENST00000626109 LURAP1LQ8IV03 231 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 GALNT12Q8IXK2 581 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 SLCO2A1Q92959 643 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 TATDN2Q93075 761 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 KREMEN1Q96MU8 473 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 NT5C1AQ9BXI3 368 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 NSRP1Q9H0G5 558 aaKnown RBP11.89□□□□□ -0.51
LINC00538-201ENST00000626109 PRO3102Q9H379 93 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 OLA1Q9NTK5 396 aaKnown RBP11.89□□□□□ -0.51
LINC00538-201ENST00000626109 MARCH5Q9NX47 278 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 WHRNQ9P202 907 aa11.89□□□□□ -0.51
LINC00538-201ENST00000626109 NXF1Q9UBU9 619 aaKnown RBP11.89□□□□□ -0.51
LINC00538-201ENST00000626109 ADAM28Q9UKQ2 775 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms