RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 POLR2FP61218 127 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 RACK1P63244 317 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 CDR2Q01850 454 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 BNC1Q01954 994 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 TRIP6Q15654 476 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 TRIM72Q6ZMU5 477 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 DBX2Q6ZNG2 339 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 C14orf80Q86SX3 495 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 SETD3Q86TU7 594 aaPredicted RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 NAXDQ8IW45 347 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 CPA5Q8WXQ8 436 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 OR8D1Q8WZ84 308 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 TBCBQ99426 244 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 C2orf49Q9BVC5 232 aaPredicted RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 TM7SF3Q9NS93 570 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 NOCTQ9UK39 431 aaKnown RBP19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 ANKRD6Q9Y2G4 727 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 DOCK4Q8N1I0 1966 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 USP24Q9UPU5 2620 aa19.6■□□□□ 0.73
CCDC28A-203ENST00000617445 LRRC10BA6NIK2 292 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 SLC7A4O43246 635 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 GFPT2O94808 682 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 IL1BP01584 269 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 CYP1A1P04798 512 aaPredicted RBP19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 IGHV4-34P06331 123 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 TFE3P19532 575 aaPredicted RBP19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 STAT1P42224 750 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 PSMD8P48556 350 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 JAM2P57087 298 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 MYL5Q02045 173 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 STX1AQ16623 288 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 NAA35Q5VZE5 725 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 NCEH1Q6PIU2 408 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 BNIPLQ7Z465 357 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 GLRX5Q86SX6 157 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 ZNF683Q8IZ20 524 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 ADAM33Q9BZ11 813 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 MUC3BQ9H195 1237 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 KDM4CQ9H3R0 1056 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 FAM207AQ9NSI2 230 aaPredicted RBP19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 SERGEFQ9UGK8 458 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 LIMA1Q9UHB6 759 aaKnown RBP19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 HS3ST2Q9Y278 367 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 NEUROG3Q9Y4Z2 214 aa19.59■□□□□ 0.73
CCDC28A-203ENST00000617445 IGLV3-10A0A075B6K4 115 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 FAM47DPA6NHR8 397 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 C10orf142B7Z368 130 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 GOLGA8SH3BPF8 625 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ENDOD1O94919 500 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 MBD3O95983 291 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 PROS1P07225 676 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ZNF18P17022 549 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 MMP8P22894 467 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 FLT3P36888 993 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 COPB1P53618 953 aaKnown RBP19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 DLG2Q15700 870 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 KIF19Q2TAC6 998 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ACCSLQ4AC99 568 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 C6orf118Q5T5N4 469 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ZNF783Q6ZMS7 281 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ADAT2Q7Z6V5 191 aaKnown RBP19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 SH2D3CQ8N5H7 860 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 AADATQ8N5Z0 425 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 CCDC114Q96M63 670 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 ORAI3Q9BRQ5 295 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 SCNM1Q9BWG6 230 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 RETREG1Q9H6L5 497 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 SIK3Q9Y2K2 1263 aa19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 FARP1Q9Y4F1 1045 aaPredicted RBP19.58■□□□□ 0.72
CCDC28A-203ENST00000617445 LGALS16A8MUM7 142 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 C1QTNF3-AMACRE9PGA6 284 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 MCF2LO15068 1137 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 VILLO15195 856 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 FLRT2O43155 660 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 CBFA2T3O75081 653 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 CNTN5O94779 1100 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 RHOCP08134 193 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 NUDT1P36639 197 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 IRAK1P51617 712 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 FMO1Q01740 532 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 NEK11Q8NG66 645 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 OR52K2Q8NGK3 314 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 OR14C36Q8NHC7 312 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 SETD7Q8WTS6 366 aaKnown RBP19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 FAM131CQ96AQ9 280 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 CDC6Q99741 560 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 ACE2Q9BYF1 805 aaPredicted RBP19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 IL21RQ9HBE5 538 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 NLRC4Q9NPP4 1024 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 ANLNQ9NQW6 1124 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 PCOLCE2Q9UKZ9 415 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 PPM1HQ9ULR3 514 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 FNDC3AQ9Y2H6 1198 aaKnown RBP19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 SNX11Q9Y5W9 270 aa19.57■□□□□ 0.72
CCDC28A-203ENST00000617445 TMEM8BA6NDV4 472 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 E9PAM4 449 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 I6L893 689 aaPredicted RBP19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 CDK11BP21127 795 aaKnown RBP19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 OR1E1P30953 314 aa19.56■□□□□ 0.72
CCDC28A-203ENST00000617445 GGCXP38435 758 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms