RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 DMWDQ09019 674 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 CAMK2GQ13555 558 aaPredicted RBP26.42■■□□□ 1.82
TRIM28-204ENST00000594806 BYSLQ13895 437 aaKnown RBP26.42■■□□□ 1.82
TRIM28-204ENST00000594806 DPYSL2Q16555 572 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 MDGA1Q8NFP4 955 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 MYO19Q96H55 970 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 CALR3Q96L12 384 aaKnown RBP26.42■■□□□ 1.82
TRIM28-204ENST00000594806 ZWILCHQ9H900 591 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 GPATCH2LQ9NWQ4 482 aa26.42■■□□□ 1.82
TRIM28-204ENST00000594806 BCCIPQ9P287 314 aaKnown RBP eCLIP26.42■■□□□ 1.82
TRIM28-204ENST00000594806 A0A0A6YYK5 440 aaPredicted RBP26.41■■□□□ 1.82
TRIM28-204ENST00000594806 TARSL2A2RTX5 802 aaKnown RBP26.41■■□□□ 1.82
TRIM28-204ENST00000594806 EEF2KO00418 725 aaKnown RBP26.41■■□□□ 1.82
TRIM28-204ENST00000594806 IL1R2P27930 398 aa26.41■■□□□ 1.82
TRIM28-204ENST00000594806 YBEYP58557 167 aaPredicted RBP26.41■■□□□ 1.82
TRIM28-204ENST00000594806 SLC20A2Q08357 652 aa26.41■■□□□ 1.82
TRIM28-204ENST00000594806 USP39Q53GS9 565 aaKnown RBP26.41■■□□□ 1.82
TRIM28-204ENST00000594806 KIAA1211LQ6NV74 962 aa26.41■■□□□ 1.82
TRIM28-204ENST00000594806 RAD54BQ9Y620 910 aa26.41■■□□□ 1.82
TRIM28-204ENST00000594806 WDFY4Q6ZS81 3184 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 A0A0D9SEW6 157 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 RAMP2O60895 175 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 KRT7P08729 469 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 RARAP10276 462 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 C7P10643 843 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 GABRG2P18507 467 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 PXNP49023 591 aaPredicted RBP26.4■■□□□ 1.82
TRIM28-204ENST00000594806 CA9Q16790 459 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 HNRNPA1L2Q32P51 320 aaKnown RBP26.4■■□□□ 1.82
TRIM28-204ENST00000594806 C11orf74Q86VG3 221 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 TMEM139Q8IV31 216 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 TXLNBQ8N3L3 684 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 HMGB4Q8WW32 186 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 GAB3Q8WWW8 586 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 KCTD15Q96SI1 283 aaPredicted RBP26.4■■□□□ 1.82
TRIM28-204ENST00000594806 PSMB7Q99436 277 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 FAM86C1Q9NVL1 165 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 DNAI1Q9UI46 699 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 HS3ST2Q9Y278 367 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 R4GN57 208 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 EML5Q05BV3 1969 aa26.4■■□□□ 1.82
TRIM28-204ENST00000594806 H3BRJ5 948 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 DAPK3O43293 454 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 ARL4AP40617 200 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 SLC1A1P43005 524 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 CTSOP43234 321 aaPredicted RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 SSR1P43307 286 aaKnown RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 MESDQ14696 234 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 POLD3Q15054 466 aaPredicted RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 PPP6R3Q5H9R7 873 aaPredicted RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 DAB2IPQ5VWQ8 1189 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 RETSATQ6NUM9 610 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 RAD9BQ6WBX8 426 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 RFX8Q6ZV50 586 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 METTL3Q86U44 580 aaKnown RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 UMODL1-AS1Q8N2C9 162 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 PGBD3Q8N328 593 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 OR2T3Q8NH03 318 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 ACE2Q9BYF1 805 aaPredicted RBP26.39■■□□□ 1.82
TRIM28-204ENST00000594806 ATP13A1Q9HD20 1204 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 HPCAL4Q9UM19 191 aa26.39■■□□□ 1.82
TRIM28-204ENST00000594806 EDDM13A0A1B0GTR0 161 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 ATP9BO43861 1147 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 ZNF217O75362 1048 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 HLA-EP13747 358 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 TCF4P15884 667 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 CLCN6P51797 869 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 GEMIN4P57678 1058 aaKnown RBP26.38■■□□□ 1.81
TRIM28-204ENST00000594806 KCNT1Q5JUK3 1230 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 POLNQ7Z5Q5 900 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 OR7D4Q8NG98 312 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 ARHGEF2Q92974 986 aaKnown RBP26.38■■□□□ 1.81
TRIM28-204ENST00000594806 RPL10LQ96L21 214 aaKnown RBP26.38■■□□□ 1.81
TRIM28-204ENST00000594806 MRGPRX1Q96LB2 322 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 SPON2Q9BUD6 331 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 EPC1Q9H2F5 836 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 PRSS16Q9NQE7 514 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 STAU2Q9NUL3 570 aaKnown RBP eCLIP26.38■■□□□ 1.81
TRIM28-204ENST00000594806 NDFIP2Q9NV92 336 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 RCOR3Q9P2K3 495 aaPredicted RBP26.38■■□□□ 1.81
TRIM28-204ENST00000594806 VPS51Q9UID3 782 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 SLCO3A1Q9UIG8 710 aa26.38■■□□□ 1.81
TRIM28-204ENST00000594806 HRO43593 1189 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 RPP40O75818 363 aaKnown RBP26.37■■□□□ 1.81
TRIM28-204ENST00000594806 NDUFV2P19404 249 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 NOP2P46087 812 aaKnown RBP26.37■■□□□ 1.81
TRIM28-204ENST00000594806 SMTNL2Q2TAL5 461 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 PARP15Q460N3 678 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 IL31Q6EBC2 164 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 TMPRSS6Q8IU80 811 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 SH2D3CQ8N5H7 860 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 LZTR1Q8N653 840 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 CCDC112Q8NEF3 446 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 FAM71BQ8TC56 605 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 HSPH1Q92598 858 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 NKD2Q969F2 451 aaPredicted RBP26.37■■□□□ 1.81
TRIM28-204ENST00000594806 CWC15Q9P013 229 aaKnown RBP26.37■■□□□ 1.81
TRIM28-204ENST00000594806 NUP205Q92621 2012 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 PLXND1Q9Y4D7 1925 aa26.37■■□□□ 1.81
TRIM28-204ENST00000594806 SPAG17Q6Q759 2223 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms