RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EEF2KMTQ96G04 330 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 FCRL2Q96LA5 508 aaPredicted RBP17.45■□□□□ 0.38
VPS29-204ENST00000548259 DUSP23Q9BVJ7 150 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 ARHGAP20Q9P2F6 1191 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 SLC25A13Q9UJS0 675 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 RCOR1Q9UKL0 485 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 FARP1Q9Y4F1 1045 aaPredicted RBP17.45■□□□□ 0.38
VPS29-204ENST00000548259 PCDHB1Q9Y5F3 818 aa17.45■□□□□ 0.38
VPS29-204ENST00000548259 A0A1B0GVL5 298 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 F5H5T6 163 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 RIOK3O14730 519 aaKnown RBP17.44■□□□□ 0.38
VPS29-204ENST00000548259 ALOX15BO15296 676 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 RTN2O75298 545 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 THEGLP0DJG4 465 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 RBMS1P29558 406 aaKnown RBP17.44■□□□□ 0.38
VPS29-204ENST00000548259 SYKP43405 635 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 STK19P49842 368 aaPredicted RBP17.44■□□□□ 0.38
VPS29-204ENST00000548259 ACCSLQ4AC99 568 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 PMF1Q6P1K2 205 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 TMC6Q7Z403 805 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 APCDD1Q8J025 514 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 SLC25A45Q8N413 288 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 DQX1Q8TE96 717 aaKnown RBP17.44■□□□□ 0.38
VPS29-204ENST00000548259 ERCC4Q92889 916 aaPredicted RBP17.44■□□□□ 0.38
VPS29-204ENST00000548259 FAM131CQ96AQ9 280 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 GRAMD1AQ96CP6 724 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 BTN2A3PQ96KV6 586 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 MIS12Q9H081 205 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 CPNE5Q9HCH3 593 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 NCKIPSDQ9NZQ3 722 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 COQ4Q9Y3A0 265 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 PLXNA2O75051 1894 aa17.44■□□□□ 0.38
VPS29-204ENST00000548259 MGAQ8IWI9 3026 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 PIK3R2O00459 728 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 FFAR2O15552 330 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 CSO75390 466 aaKnown RBP17.43■□□□□ 0.38
VPS29-204ENST00000548259 TACR2P21452 398 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 AKT2P31751 481 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 KCNMA1Q12791 1236 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 ZCWPW2Q504Y3 356 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 RABGAP1LQ5R372 815 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 CDCP2Q5VXM1 449 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 NEK5Q6P3R8 708 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 TMEM270Q6UE05 265 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 BEND5Q7L4P6 421 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 ATP6V0D2Q8N8Y2 350 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 FAM181AQ8N9Y4 354 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 FAM174AQ8TBP5 190 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 MED8Q96G25 268 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 SLC39A13Q96H72 371 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 CCDC114Q96M63 670 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 TSG101Q99816 390 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 NLGN3Q9NZ94 848 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 PCDHB4Q9Y5E5 795 aa17.43■□□□□ 0.38
VPS29-204ENST00000548259 SLC16A3O15427 465 aaKnown RBP17.42■□□□□ 0.38
VPS29-204ENST00000548259 SLC31A1O15431 190 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 PDGFRAP16234 1089 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 ACADSBP45954 432 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 VASPP50552 380 aaPredicted RBP17.42■□□□□ 0.38
VPS29-204ENST00000548259 CNTN1Q12860 1018 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 CBWD6Q4V339 395 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 CBWD3Q5JTY5 395 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 CBWD5Q5RIA9 395 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 RAP1GAP2Q684P5 730 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 MAPK15Q8TD08 544 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 MYEOVQ96EZ4 313 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 IFT43Q96FT9 208 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 DYRK4Q9NR20 520 aa17.42■□□□□ 0.38
VPS29-204ENST00000548259 A0A1B0GVM2 712 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 TCAF2A6NFQ2 919 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 SLC2A3P11169 496 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 PLK1P53350 603 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 HNRNPKP61978 463 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS29-204ENST00000548259 DNM1Q05193 864 aaKnown RBP17.41■□□□□ 0.38
VPS29-204ENST00000548259 CETN1Q12798 172 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 DPYDQ12882 1025 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 LRMPQ12912 555 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 MTA1Q13330 715 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 POM121L1PQ3SYA9 428 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 AGBL4Q5VU57 503 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 DCP2Q8IU60 420 aaKnown RBP17.41■□□□□ 0.38
VPS29-204ENST00000548259 CLEC4CQ8WTT0 213 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 FRS2Q8WU20 508 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 SNRNP27Q8WVK2 155 aaKnown RBP17.41■□□□□ 0.38
VPS29-204ENST00000548259 VCPIP1Q96JH7 1222 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 CALN1Q9BXU9 219 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 ST7Q9NRC1 585 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.41■□□□□ 0.38
VPS29-204ENST00000548259 PPM1HQ9ULR3 514 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 NAALADL1Q9UQQ1 740 aa17.41■□□□□ 0.38
VPS29-204ENST00000548259 ATMQ13315 3056 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 COL6A6A6NMZ7 2263 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 MCF2LO15068 1137 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 ARHGAP6O43182 974 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 ATP9BO43861 1147 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 SLC28A2O43868 658 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 PIAS2O75928 621 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 VAV1P15498 845 aa17.4■□□□□ 0.38
VPS29-204ENST00000548259 HNRNPA2B1P22626 353 aaKnown RBP17.4■□□□□ 0.38
VPS29-204ENST00000548259 FKBP3Q00688 224 aaKnown RBP17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms