RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 RANBP9Q96S59 729 aa18.11■□□□□ 0.49
NUP54-205ENST00000507257 RPF1Q9H9Y2 349 aaKnown RBP18.11■□□□□ 0.49
NUP54-205ENST00000507257 NMRAL1Q9HBL8 299 aa18.11■□□□□ 0.49
NUP54-205ENST00000507257 PTBP2Q9UKA9 531 aaKnown RBP18.11■□□□□ 0.49
NUP54-205ENST00000507257 TSPAN16Q9UKR8 245 aa18.11■□□□□ 0.49
NUP54-205ENST00000507257 CDH7Q9ULB5 785 aa18.11■□□□□ 0.49
NUP54-205ENST00000507257 SLC8A2Q9UPR5 921 aa18.11■□□□□ 0.49
NUP54-205ENST00000507257 MYOCOSA0A1B0GUC4 107 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 GRID2O43424 1007 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 TIMM44O43615 452 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 CBFA2T3O75081 653 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 CABYRO75952 493 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 SCNN1AP37088 669 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 GLUD2P49448 558 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 CSE1LP55060 971 aaKnown RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 RHDQ02161 417 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 LAMTOR4Q0VGL1 99 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 KCTD21Q4G0X4 260 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 PKDCCQ504Y2 493 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 LIPMQ5VYY2 423 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 NCBP2-AS2Q69YL0 99 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 RWDD4Q6NW29 188 aaKnown RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 ZYG11AQ6WRX3 759 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 TTC30AQ86WT1 665 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 TNS4Q8IZW8 715 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ABTB1Q969K4 478 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 AKT1S1Q96B36 256 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 CSPG4P5Q96PW8 444 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ANKRD60Q9BZ19 345 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 FZD8Q9H461 694 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 SYBUQ9NX95 663 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 RRN3Q9NYV6 651 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 PACSIN3Q9UKS6 424 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 SARDHQ9UL12 918 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ZNF214Q9UL59 606 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 CDYLQ9Y232 598 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ANKRD6Q9Y2G4 727 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 LTBP4Q8N2S1 1624 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 A0A096LPK6 155 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 TRPA1O75762 1119 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 VAPBO95292 243 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ENO3P13929 434 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 EPHA3P29320 983 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 PKNOX1P55347 436 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 SESN2P58004 480 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 CRADDP78560 199 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 ATF7IP2Q5U623 682 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 CMC1Q7Z7K0 106 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 RNF168Q8IYW5 571 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 WDR55Q9H6Y2 383 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 LRRC40Q9H9A6 602 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 OLAHQ9NV23 265 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 FAF1Q9UNN5 650 aaPredicted RBP18.1■□□□□ 0.49
NUP54-205ENST00000507257 AP4S1Q9Y587 144 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 USP3Q9Y6I4 520 aa18.1■□□□□ 0.49
NUP54-205ENST00000507257 TANC1Q9C0D5 1861 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 IGKV6-21A0A0C4DH24 114 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 TCAF2A6NFQ2 919 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 SPDYE16A6NNV3 312 aaPredicted RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 GRAP2O75791 330 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 ERVK-10P10266 1014 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 TFEBP19484 476 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 MPSTP25325 297 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 TRIM25Q14258 630 aaKnown RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 STXBP2Q15833 593 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 FSTL4Q6MZW2 842 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 PATL1Q86TB9 770 aaKnown RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 TMEM135Q86UB9 458 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 URGCPQ8TCY9 931 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 RMND5BQ96G75 393 aaPredicted RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 WNK4Q96J92 1243 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 VPS50Q96JG6 964 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 GJD4Q96KN9 370 aaPredicted RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 MCMBPQ9BTE3 642 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 DNAI2Q9GZS0 605 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 ACAD9Q9H845 621 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 COQ10BQ9H8M1 238 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 CLK4Q9HAZ1 481 aaKnown RBP18.09■□□□□ 0.49
NUP54-205ENST00000507257 GGA3Q9NZ52 723 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 TNFSF13BQ9Y275 285 aa18.09■□□□□ 0.49
NUP54-205ENST00000507257 TMEM221A6NGB7 291 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 TRIM64A6NGJ6 449 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 C9IYK1 514 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 NOP56O00567 594 aaKnown RBP18.08■□□□□ 0.49
NUP54-205ENST00000507257 ITGB3P05106 788 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 CD1EP15812 388 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 PHEXP78562 749 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 PPIL2Q13356 520 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 DGKZQ13574 1117 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 PDK1Q15118 436 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 IL23RQ5VWK5 629 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 MAP1SQ66K74 1059 aaPredicted RBP18.08■□□□□ 0.49
NUP54-205ENST00000507257 LZTR1Q8N653 840 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 RNF149Q8NC42 400 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 DNERQ8NFT8 737 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 MAELQ96JY0 434 aaKnown RBP18.08■□□□□ 0.49
NUP54-205ENST00000507257 NT5C1AQ9BXI3 368 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 CDT1Q9H211 546 aa18.08■□□□□ 0.49
NUP54-205ENST00000507257 DHX35Q9H5Z1 703 aaKnown RBP18.08■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms