RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 OR10H2O60403 315 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PRR29P0C7W0 189 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PSMD5Q16401 504 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 INSCQ1MX18 579 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CKAP2Q8WWK9 683 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 SGCDQ92629 289 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 TAF6LQ9Y6J9 622 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CKMP06732 381 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RHOCP08134 193 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RHOAP61586 193 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 BRSK2Q8IWQ3 736 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 DNAJA4Q8WW22 397 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 YME1L1Q96TA2 773 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PLGRKTQ9HBL7 147 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 GPN3Q9UHW5 284 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RAB23Q9ULC3 237 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PCDHGC5Q9Y5F6 944 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 FCHO1O14526 889 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 REM1O75628 298 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 DCKP27707 260 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CSHL1Q14406 222 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ACAP1Q15027 740 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ERMAPQ96PL5 475 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 RSPH9Q9H1X1 276 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PIM2Q9P1W9 311 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PSMD13Q9UNM6 376 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ANKDD1BA6NHY2 528 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 MYCBPAPQ8TBZ2 947 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 TCF7P36402 384 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 BCAT1P54687 386 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 PPP2R2BQ00005 443 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 OFCC1Q8IZS5 231 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 TNFAIP8L1Q8WVP5 186 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF668Q96K58 619 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 DAGLAQ9Y4D2 1042 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ALG6Q9Y672 507 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 MROH7-TTC4A0A0A0MT08 1334 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC33A1O00400 549 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CYP1A1P04798 512 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CDKL1Q00532 357 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 WDR59Q6PJI9 974 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 KBTBD2Q8IY47 623 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 OR2W6PQ8NHA6 318 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 LPAR1Q92633 364 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 CHMP1AQ9HD42 196 aaPredicted RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 SDC2P34741 201 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ANO7Q6IWH7 933 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF549Q6P9A3 640 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 ATG9AQ7Z3C6 839 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 C10orf107Q8IVU9 208 aa14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 HBS1LQ9Y450 684 aaKnown RBP14.15□□□□□ -0.14
CCDC88A-201ENST00000263630 KDM6AO15550 1401 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 FOSL1P15407 271 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 STXBP1P61764 594 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 AMIGO1Q86WK6 493 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 RERGQ96A58 199 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SLC25A23Q9BV35 468 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CCNB1IP1Q9NPC3 277 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 PRLP01236 227 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 LMBRD2Q68DH5 695 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 HNRNPLLQ8WVV9 542 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 PHB2Q99623 299 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 TLR8Q9NR97 1041 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 GMPPBQ9Y5P6 360 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 C2CD2LO14523 706 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SERPINE1P05121 402 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CRATP43155 626 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF772Q68DY9 489 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 QSOX2Q6ZRP7 698 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF607Q96SK3 696 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SMURF2Q9HAU4 748 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 MID1IP1Q9NPA3 183 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 USP18Q9UMW8 372 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 A0A1B0GTH6 734 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CD151P48509 253 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 POLD2P49005 469 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 C17orf75Q9HAS0 396 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 DMGDHQ9UI17 866 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SYNMO15061 1565 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 A0A0G2JPF8 293 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 HNRNPCL3B7ZW38 293 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 H0YJX3 145 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 HNRNPCL4P0DMR1 293 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 POU5F1Q01860 360 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SETMARQ53H47 684 aaPredicted RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 PIK3R6Q5UE93 754 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF613Q6PF04 617 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF540Q8NDQ6 660 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 CITED4Q96RK1 184 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 LMAN2LQ9H0V9 348 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 ZNF224Q9NZL3 707 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 NUAK1O60285 661 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 PRLRP16471 622 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 NAB1Q13506 487 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 GPAT3Q53EU6 434 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 SYT12Q8IV01 421 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 METTL6Q8TCB7 284 aa14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 TEFMQ96QE5 360 aaKnown RBP14.14□□□□□ -0.15
CCDC88A-201ENST00000263630 C6orf222P0C671 652 aaPredicted RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms