RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 MAGEE2Q8TD90 523 aaPredicted RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 SUSD6Q92537 303 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 EDEM1Q92611 657 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 C18orf8Q96DM3 657 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 DHRS1Q96LJ7 313 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 C9orf16Q9BUW7 83 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 A0A0B4J269 797 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 PGK1P00558 417 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 TAL1P17542 331 aaPredicted RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 HNMTP50135 292 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 TUBB3Q13509 450 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 SEMA4DQ92854 862 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 UCKL1Q9NWZ5 548 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 ZMYM4Q5VZL5 1548 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 LOC110117498-PIK3R3F6TDL0 507 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 CCNT2O60583 730 aaKnown RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 ACAT1P24752 427 aaKnown RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 TIMM50Q3ZCQ8 353 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 PCSK9Q8NBP7 692 aaKnown RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 BORCS5Q969J3 196 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 FERD3LQ96RJ6 166 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 VPS33BQ9H267 617 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 PABPC3Q9H361 631 aaKnown RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 BRD9Q9H8M2 597 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 CORO1CQ9ULV4 474 aaPredicted RBP11.29□□□□□ -0.6
MSH6-201ENST00000234420 SYNPO2Q9UMS6 1093 aa11.29□□□□□ -0.6
MSH6-201ENST00000234420 VAV1P15498 845 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PCSK1P29120 753 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PTDSS1P48651 473 aaKnown RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 ABCG2Q9UNQ0 655 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PCDHA11Q9Y5I1 949 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 AK5Q9Y6K8 562 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PSMG1O95456 288 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ZBTB11O95625 1053 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 THP07101 528 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PDGFRAP16234 1089 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 HOXA7P31268 230 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 TAP1Q03518 808 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 MADCAM1Q13477 382 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TRIM72Q6ZMU5 477 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PTAR1Q7Z6K3 402 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 FAM71DQ8N9W8 422 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 SLC9A6Q92581 669 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 DMRTB1Q96MA1 342 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TRPM5Q9NZQ8 1165 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PCDHB11Q9Y5F2 797 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 FAM172BPA6NC97 362 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PIK3CDO00329 1044 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 SH2B2O14492 632 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 TDP2O95551 362 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TCF4P15884 667 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ESRP1Q6NXG1 681 aaKnown RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 PRMT9Q6P2P2 845 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ACOT1Q86TX2 421 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ZDHHC13Q8IUH4 622 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ZNF615Q8N8J6 731 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 NKD1Q969G9 470 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ELOVL2Q9NXB9 296 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 A0A1W2PQC6 194 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 EPC2Q52LR7 807 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 RAD9BQ6WBX8 426 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 C8orf59Q8N0T1 100 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 CXorf40AQ8TE69 158 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 KRT35Q92764 455 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 DSN1Q9H410 356 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 SLC28A3Q9HAS3 691 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 CFAP74Q9C0B2 1584 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3DA0A087WVF3 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3IA0A087WXS9 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3EA0A087X179 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3KA0A087X1G2 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3FA6NER0 549 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3LB9A6J9 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 H3BM21 787 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 FARP2O94887 1054 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3HP0C7X1 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 RHOAP61586 193 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 AMZ1Q400G9 498 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 FGD3Q5JSP0 725 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 RAP1GAP2Q684P5 730 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3GQ6DHY5 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3CQ6IPX1 549 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TBC1D3Q8IZP1 549 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 GPR152Q8TDT2 470 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 OSCP1Q8WVF1 389 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TLE6Q9H808 572 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 MRPS23Q9Y3D9 190 aaKnown RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 A8MU76 341 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ATMINO43313 823 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 PPP1R26Q5T8A7 1209 aaPredicted RBP11.28□□□□□ -0.6
MSH6-201ENST00000234420 NKIRAS2Q9NYR9 191 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 NARFQ9UHQ1 456 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 ZMYM5Q9UJ78 669 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 TUBE1Q9UJT0 475 aa11.28□□□□□ -0.6
MSH6-201ENST00000234420 THEGLP0DJG4 465 aa11.27□□□□□ -0.6
MSH6-201ENST00000234420 FXR1P51114 621 aaKnown RBP eCLIP11.27□□□□□ -0.62e-6■■■□□ 14.9
MSH6-201ENST00000234420 SLC45A4Q5BKX6 768 aa11.27□□□□□ -0.6
MSH6-201ENST00000234420 DENND5BQ6ZUT9 1274 aa11.27□□□□□ -0.6
MSH6-201ENST00000234420 PPP1R10Q96QC0 940 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms