RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	TBC1D3	Q8IZP1	549 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	GPT2	Q8TD30	523 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	KCTD13	Q8WZ19	329 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	PRICKLE1	Q96MT3	831 aa	Predicted RBP	12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	SPAG5	Q96R06	1193 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ASCL3	Q9NQ33	180 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ARHGAP20	Q9P2F6	1191 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	CYTH4	Q9UIA0	394 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ERVW-1	Q9UQF0	538 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	TRAF3IP3	Q9Y228	551 aa		12.87	□□□□□ -0.35
CAPN1-223	ENST00000533079	ASXL3	Q9C0F0	2248 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	YJEFN3	A6XGL0	299 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079		E7ENQ6	273 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	PRAMEF26	H0Y7S4	382 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079		K7ENP7	123 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	TRIM38	O00635	465 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	PLRG1	O43660	514 aa	Known RBP	12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	OPA1	O60313	960 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	USP12	O75317	370 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	IL1B	P01584	269 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	SETSIP	P0DME0	302 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	CASP1	P29466	404 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC6A4	P31645	630 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	DRD3	P35462	400 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	NNMT	P40261	264 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	GCLM	P48507	274 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	ECT2L	Q008S8	904 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	STK4	Q13043	487 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	NNT	Q13423	1086 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	GOLGA7B	Q2TAP0	167 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	KRT39	Q6A163	491 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	RFWD3	Q6PCD5	774 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	INO80C	Q6PI98	192 aa	Predicted RBP	12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	CEP57L1	Q8IYX8	460 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	IRGQ	Q8WZA9	623 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	EDEM1	Q92611	657 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM129B	Q96TA1	746 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM13B	Q9NYF5	915 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	TSPAN16	Q9UKR8	245 aa		12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	INTS6	Q9UL03	887 aa	Known RBP	12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	UBR5	O95071	2799 aa	Predicted RBP	12.86	□□□□□ -0.35
CAPN1-223	ENST00000533079	COL6A6	A6NMZ7	2263 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	TTC34	A8MYJ7	566 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	KLRC4	O43908	158 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	SDC3	O75056	442 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	CS	O75390	466 aa	Known RBP	12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	LETM1	O95202	739 aa	Predicted RBP	12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	LUC7L3	O95232	432 aa	Known RBP	12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	MYL1	P05976	194 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	TRIM49	P0CI25	452 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	TRIM49C	P0CI26	452 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	DGKA	P23743	735 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	NR2F2	P24468	414 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	MLLT3	P42568	568 aa	Predicted RBP	12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	DUSP3	P51452	185 aa	Predicted RBP	12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	DAOA	P59103	153 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	SKOR1	P84550	965 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	PPP3CA	Q08209	521 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC12A1	Q13621	1099 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	SGO2	Q562F6	1265 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM46C	Q5VWP2	391 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM186B	Q8IYM0	893 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	FBXL13	Q8NEE6	735 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	PTPRN2	Q92932	1015 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	TATDN2	Q93075	761 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	IFT43	Q96FT9	208 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	VCPIP1	Q96JH7	1222 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	SERPINB11	Q96P15	392 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	DUSP23	Q9BVJ7	150 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	PREB	Q9HCU5	417 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	NLGN3	Q9NZ94	848 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079	CEP83	Q9Y592	693 aa		12.85	□□□□□ -0.35
CAPN1-223	ENST00000533079		A0A1B0GVM2	712 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	TULP2	O00295	520 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	ALOX15B	O15296	676 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	STX10	O60499	249 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	AFM	P43652	599 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	TBX4	P57082	545 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	MCCD1	P59942	119 aa	Predicted RBP	12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	YWHAE	P62258	255 aa	Known RBP	12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	SULT2A1	Q06520	285 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	XKR5	Q6UX68	686 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	STK40	Q8N2I9	435 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	SLC25A45	Q8N413	288 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	CARNMT1	Q8N4J0	409 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	TMEM145	Q8NBT3	493 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	FAM174A	Q8TBP5	190 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	KLHDC7B	Q96G42	594 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	SPATA32	Q96LK8	384 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	KLHL11	Q9NVR0	708 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	NCKIPSD	Q9NZQ3	722 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	STIM2	Q9P246	746 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	PCDHGA8	Q9Y5G5	932 aa		12.84	□□□□□ -0.35
CAPN1-223	ENST00000533079	HECTD1	Q9ULT8	2610 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	GOLGA6L7	A0A1B0GV03	622 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	NEMP2	A6NFY4	417 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	C1QTNF3-AMACR	E9PGA6	284 aa		12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	GADD45B	O75293	160 aa	Predicted RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	RPL13	P26373	211 aa	Known RBP	12.83	□□□□□ -0.36
CAPN1-223	ENST00000533079	RBMS1	P29558	406 aa	Known RBP	12.83	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms