RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 VPS28Q9UK41 221 aa11.54□□□□□ -0.56
RFFL-204ENST00000414419 NCKAP1Q9Y2A7 1128 aa11.54□□□□□ -0.56
RFFL-204ENST00000414419 NYNRINQ9P2P1 1898 aaKnown RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 EDDM13A0A1B0GTR0 161 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 TARSL2A2RTX5 802 aaKnown RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 C2CD4BA6NLJ0 364 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 MEI4A8MW99 385 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 E9PAM4 449 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 SLC30A4O14863 429 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 CFIP05156 583 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 RHOCP08134 193 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 GNSP15586 552 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 GPD1P21695 349 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 ITPKAP23677 461 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 MZF1P28698 734 aaPredicted RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 HOXD12P35452 270 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 CTSOP43234 321 aaPredicted RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 PTPN9P43378 593 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 NUMBP49757 651 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 PLK1P53350 603 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 GSCP56915 257 aaPredicted RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 KRT83P78385 493 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 FANCCQ00597 558 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 FOXK2Q01167 660 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 C1QBPQ07021 282 aaKnown RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 DUOXA1Q1HG43 343 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 C15orf59Q2T9L4 293 aaPredicted RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 HNRNPA1L2Q32P51 320 aaKnown RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 ZSCAN23Q3MJ62 389 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 C5orf22Q49AR2 442 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 ACCSLQ4AC99 568 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 TRNP1Q6NT89 227 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 DNAJC24Q6P3W2 148 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 DCUN1D2Q6PH85 259 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 STRADAQ7RTN6 431 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 IRF2BP2Q7Z5L9 587 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 C14orf80Q86SX3 495 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 C3orf20Q8ND61 904 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 JOSD2Q8TAC2 188 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 GANCQ8TET4 914 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 BAP1Q92560 729 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 ZNF419Q96HQ0 510 aaPredicted RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 MRGPRX3Q96LB0 322 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 FEM1AQ9BSK4 669 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 EDEM2Q9BV94 578 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 EDEM3Q9BZQ6 932 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 TMEM74BQ9NUR3 256 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 SLCO3A1Q9UIG8 710 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 PILRBQ9UKJ0 227 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 SCML1Q9UN30 329 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 SNX10Q9Y5X0 201 aa11.53□□□□□ -0.56
RFFL-204ENST00000414419 ATXN2Q99700 1313 aaKnown RBP11.53□□□□□ -0.56
RFFL-204ENST00000414419 DCDC2BA2VCK2 349 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 SIGLEC16A6NMB1 481 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 TMCO5BA8MYB1 307 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 TTC34A8MYJ7 566 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 PATE3B3GLJ2 98 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 SIN3BO75182 1162 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 CNTN5O94779 1100 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 ENDOD1O94919 500 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 GJB6O95452 261 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 TPM3P06753 285 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 OR1E1P30953 314 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 RFC1P35251 1148 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 STK19P49842 368 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 LIMK1P53667 647 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 ATXN3P54252 364 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 RPS14P62263 151 aaKnown RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 IRX4P78413 519 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 GFPT1Q06210 699 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 KLHL30Q0D2K2 578 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 PTP4A2Q12974 167 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 CCDC14Q49A88 953 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 ALFQ53S48 1182 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 C6orf118Q5T5N4 469 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 STPG1Q5TH74 334 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 DAB2IPQ5VWQ8 1189 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 CXorf57Q6NSI4 855 aaKnown RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 MON1BQ7L1V2 547 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 BNIPLQ7Z465 357 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 SETD3Q86TU7 594 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 SLC41A1Q8IVJ1 513 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 CADM4Q8NFZ8 388 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 FAM172AQ8WUF8 416 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 MYO19Q96H55 970 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 C2orf49Q9BVC5 232 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 BTBD1Q9H0C5 482 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 RSPH9Q9H1X1 276 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 MTG2Q9H4K7 406 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 HAUS4Q9H6D7 363 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 ANLNQ9NQW6 1124 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 TMPRSS4Q9NRS4 437 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 RXFP3Q9NSD7 469 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 AIPL1Q9NZN9 384 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 MPP6Q9NZW5 540 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 SUSD2Q9UGT4 822 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 EVLQ9UI08 416 aaPredicted RBP11.52□□□□□ -0.57
RFFL-204ENST00000414419 TBC1D30Q9Y2I9 924 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 ITIH6Q6UXX5 1313 aa11.52□□□□□ -0.57
RFFL-204ENST00000414419 IGLV3-10A0A075B6K4 115 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms