RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 EMILIN2Q9BXX0 1053 aa18.6■□□□□ 0.57
VIM-201ENST00000224237 SLC39A8Q9C0K1 460 aa18.6■□□□□ 0.57
VIM-201ENST00000224237 VPS37BQ9H9H4 285 aa18.6■□□□□ 0.57
VIM-201ENST00000224237 ENTPD7Q9NQZ7 604 aa18.6■□□□□ 0.57
VIM-201ENST00000224237 NDFIP2Q9NV92 336 aa18.6■□□□□ 0.57
VIM-201ENST00000224237 LINC01553A4QN01 128 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 RGS16O15492 202 aaPredicted RBP18.59■□□□□ 0.57
VIM-201ENST00000224237 PSMB4P28070 264 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 NDST2P52849 883 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 LONRF1Q17RB8 773 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 PABPC1LQ4VXU2 614 aaKnown RBP18.59■□□□□ 0.57
VIM-201ENST00000224237 TEX44Q53QW1 395 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 ITPRIPL1Q6GPH6 555 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 TIGD7Q6NT04 549 aaPredicted RBP18.59■□□□□ 0.57
VIM-201ENST00000224237 CCDC149Q6ZUS6 474 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 UMODL1-AS1Q8N2C9 162 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 KLHL5Q96PQ7 755 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 STMN4Q9H169 189 aaPredicted RBP18.59■□□□□ 0.57
VIM-201ENST00000224237 XAB2Q9HCS7 855 aaKnown RBP18.59■□□□□ 0.57
VIM-201ENST00000224237 SHROOM3Q8TF72 1996 aa18.59■□□□□ 0.57
VIM-201ENST00000224237 SMIM23A6NLE4 172 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 DRGXA6NNA5 263 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 LRG1P02750 347 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 MAGEA3P43357 314 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 SLC11A2P49281 568 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 ZBTB17Q13105 803 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 DNAJC21Q5F1R6 531 aaKnown RBP18.58■□□□□ 0.57
VIM-201ENST00000224237 LILRA6Q6PI73 481 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 CAND1Q86VP6 1230 aaKnown RBP18.58■□□□□ 0.57
VIM-201ENST00000224237 PALM2Q8IXS6 379 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 LRRC39Q96DD0 335 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 RPRD1AQ96P16 312 aaPredicted RBP18.58■□□□□ 0.57
VIM-201ENST00000224237 WDR83Q9BRX9 315 aaKnown RBP18.58■□□□□ 0.57
VIM-201ENST00000224237 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.58■□□□□ 0.57
VIM-201ENST00000224237 TEX264Q9Y6I9 313 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 ANAPC1Q9H1A4 1944 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 MYO7AQ13402 2215 aa18.58■□□□□ 0.57
VIM-201ENST00000224237 HIDE1A8MVS5 230 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 F5H5T6 163 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 ACSL4O60488 711 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 MAFKO60675 156 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 NR1D1P20393 614 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 TACR2P21452 398 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 SLCO1A2P46721 670 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 MTM1Q13496 603 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 PLPP4Q5VZY2 271 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 NADSYN1Q6IA69 706 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 IGSF8Q969P0 613 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 AZIN2Q96A70 460 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 GBA3Q9H227 469 aa18.58■□□□□ 0.56
VIM-201ENST00000224237 NOVA2Q9UNW9 492 aaKnown RBP18.58■□□□□ 0.56
VIM-201ENST00000224237 MYO18AQ92614 2054 aaKnown RBP18.58■□□□□ 0.56
VIM-201ENST00000224237 C2orf78A6NCI8 922 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 AGTP01019 485 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 F11P03951 625 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 MLNP12872 115 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 ELK3P41970 407 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 IRAK1P51617 712 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 UBE3AQ05086 875 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 ALFQ53S48 1182 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 ZNF534Q76KX8 674 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 TFAP2DQ7Z6R9 452 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 TMEM150AQ86TG1 271 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 PDCD7Q8N8D1 485 aaKnown RBP18.57■□□□□ 0.56
VIM-201ENST00000224237 POF1BQ8WVV4 589 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 TLCD1Q96CP7 247 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 TEKT5Q96M29 485 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 AGAP3Q96P47 875 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 PPCSQ9HAB8 311 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 ZNF334Q9HCZ1 680 aaPredicted RBP18.57■□□□□ 0.56
VIM-201ENST00000224237 TLR9Q9NR96 1032 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 RSPH14Q9UHP6 348 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 CHMP2BQ9UQN3 213 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 CDH23Q9H251 3354 aa18.57■□□□□ 0.56
VIM-201ENST00000224237 EXOC1LA0A1B0GW35 172 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 MATN3O15232 486 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 ZBTB24O43167 697 aaPredicted RBP18.56■□□□□ 0.56
VIM-201ENST00000224237 CDH16O75309 829 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 AVILO75366 819 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 SPAG6O75602 509 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 CNTN5O94779 1100 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 GLUD1P00367 558 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 C8AP07357 584 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 GPX6P59796 221 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 IFI35P80217 286 aaPredicted RBP18.56■□□□□ 0.56
VIM-201ENST00000224237 C5orf22Q49AR2 442 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 ARHGAP36Q6ZRI8 547 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 CAPN12Q6ZSI9 719 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 C3orf62Q6ZUJ4 267 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 RIBC1Q8N443 379 aaPredicted RBP18.56■□□□□ 0.56
VIM-201ENST00000224237 KREMEN2Q8NCW0 462 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 ZSCAN18Q8TBC5 510 aaPredicted RBP18.56■□□□□ 0.56
VIM-201ENST00000224237 RNF38Q9H0F5 515 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 RETREG1Q9H6L5 497 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 OBSL1O75147 1896 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 GBF1Q92538 1859 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 NYNRINQ9P2P1 1898 aaKnown RBP18.56■□□□□ 0.56
VIM-201ENST00000224237 C2orf71A6NGG8 1288 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 ARHGAP42A6NI28 874 aa18.56■□□□□ 0.56
VIM-201ENST00000224237 ERI2A8K979 691 aaKnown RBP18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms