RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 FAM182BQ5T319 152 aa15.11■□□□□ 0.01
TRIM28-210ENST00000597618 POGKQ9P215 609 aa15.11■□□□□ 0.01
TRIM28-210ENST00000597618 TNS1Q9HBL0 1735 aaKnown RBP15.1■□□□□ 0.01
TRIM28-210ENST00000597618 ACIN1Q9UKV3 1341 aaKnown RBP15.1■□□□□ 0.01
TRIM28-210ENST00000597618 PARD3Q8TEW0 1356 aa15.1■□□□□ 0.01
TRIM28-210ENST00000597618 ALS2Q96Q42 1657 aa15.09■□□□□ 0.01
TRIM28-210ENST00000597618 EZH2Q15910 746 aaKnown RBP15.09■□□□□ 0.01
TRIM28-210ENST00000597618 PRDM11Q9NQV5 511 aa15.08■□□□□ 0
TRIM28-210ENST00000597618 FAM196AQ6ZSG2 479 aa15.07■□□□□ 0
TRIM28-210ENST00000597618 CAMKK2Q96RR4 588 aa15.07■□□□□ 0
TRIM28-210ENST00000597618 TULP4Q9NRJ4 1543 aa15.07■□□□□ 0
TRIM28-210ENST00000597618 SPATA31A1Q5TZJ5 1347 aa15.06■□□□□ 0
TRIM28-210ENST00000597618 TRIM37O94972 964 aa15.05■□□□□ -0
TRIM28-210ENST00000597618 HIRIP3Q9BW71 556 aaPredicted RBP15.05■□□□□ -0
TRIM28-210ENST00000597618 PRR36Q9H6K5 1346 aa15.05■□□□□ -0
TRIM28-210ENST00000597618 CRYBG1Q9Y4K1 1723 aa15.04■□□□□ -0
TRIM28-210ENST00000597618 ADGRB1O14514 1584 aa15.04■□□□□ -0
TRIM28-210ENST00000597618 PAK3O75914 559 aaPredicted RBP15.04■□□□□ -0
TRIM28-210ENST00000597618 APBA3O96018 575 aa15.04■□□□□ -0
TRIM28-210ENST00000597618 YY1P25490 414 aa15.04■□□□□ -0
TRIM28-210ENST00000597618 NGDNQ8NEJ9 315 aaKnown RBP15.04■□□□□ -0
TRIM28-210ENST00000597618 KIAA0232Q92628 1395 aa15.03■□□□□ -0
TRIM28-210ENST00000597618 MINK1Q8N4C8 1332 aaPredicted RBP15.03■□□□□ -0
TRIM28-210ENST00000597618 WASLO00401 505 aaPredicted RBP15.02■□□□□ -0
TRIM28-210ENST00000597618 TRAK1Q9UPV9 953 aa15.02■□□□□ -0
TRIM28-210ENST00000597618 NBPF8Q3BBV2 869 aa15.01□□□□□ -0.01
TRIM28-210ENST00000597618 NBPF14Q5TI25 921 aa15.01□□□□□ -0.01
TRIM28-210ENST00000597618 STRN4Q9NRL3 753 aa15.01□□□□□ -0.01
TRIM28-210ENST00000597618 ATP7BP35670 1465 aa15.01□□□□□ -0.01
TRIM28-210ENST00000597618 CHRNA2Q15822 529 aa15□□□□□ -0.01
TRIM28-210ENST00000597618 RREB1Q92766 1687 aa15□□□□□ -0.01
TRIM28-210ENST00000597618 PDE3BQ13370 1112 aa14.99□□□□□ -0.01
TRIM28-210ENST00000597618 BARGINQ6ZT62 677 aa14.99□□□□□ -0.01
TRIM28-210ENST00000597618 SSH2Q76I76 1423 aa14.99□□□□□ -0.01
TRIM28-210ENST00000597618 USP35Q9P2H5 1018 aa14.98□□□□□ -0.01
TRIM28-210ENST00000597618 PPP1R1BQ9UD71 204 aaPredicted RBP14.98□□□□□ -0.01
TRIM28-210ENST00000597618 PHRF1Q9P1Y6 1649 aaKnown RBP14.98□□□□□ -0.01
TRIM28-210ENST00000597618 NUP188Q5SRE5 1749 aa14.97□□□□□ -0.01
TRIM28-210ENST00000597618 DCAF8L1A6NGE4 600 aa14.97□□□□□ -0.01
TRIM28-210ENST00000597618 SPON1Q9HCB6 807 aa14.97□□□□□ -0.01
TRIM28-210ENST00000597618 NINLQ9Y2I6 1382 aa14.97□□□□□ -0.01
TRIM28-210ENST00000597618 EVA1CP58658 441 aa14.96□□□□□ -0.01
TRIM28-210ENST00000597618 ZC3H6P61129 1189 aaKnown RBP14.96□□□□□ -0.01
TRIM28-210ENST00000597618 ITSN1Q15811 1721 aa14.96□□□□□ -0.01
TRIM28-210ENST00000597618 TCP11L2Q8N4U5 519 aa14.95□□□□□ -0.02
TRIM28-210ENST00000597618 NUDT16Q96DE0 195 aaKnown RBP14.95□□□□□ -0.02
TRIM28-210ENST00000597618 C11orf95C9JLR9 678 aaPredicted RBP14.94□□□□□ -0.02
TRIM28-210ENST00000597618 KCNQ2O43526 872 aa14.94□□□□□ -0.02
TRIM28-210ENST00000597618 NUTM2GQ5VZR2 741 aa14.93□□□□□ -0.02
TRIM28-210ENST00000597618 LARP1Q6PKG0 1096 aaKnown RBP14.93□□□□□ -0.02
TRIM28-210ENST00000597618 THRAP3Q9Y2W1 955 aaKnown RBP14.93□□□□□ -0.02
TRIM28-210ENST00000597618 POLR3AO14802 1390 aaPredicted RBP14.93□□□□□ -0.02
TRIM28-210ENST00000597618 CPDO75976 1380 aa14.93□□□□□ -0.02
TRIM28-210ENST00000597618 NRKQ7Z2Y5 1582 aa14.93□□□□□ -0.02
TRIM28-210ENST00000597618 STAC3Q96MF2 364 aa14.92□□□□□ -0.02
TRIM28-210ENST00000597618 CAMTA1Q9Y6Y1 1673 aa14.92□□□□□ -0.02
TRIM28-210ENST00000597618 UTRNP46939 3433 aa14.91□□□□□ -0.02
TRIM28-210ENST00000597618 LMO7Q8WWI1 1683 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 DCAF11Q8TEB1 546 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 KDM2AQ9Y2K7 1162 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 OVOS2A0A0G2JMS6 1433 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 OVOS2A0A0J9YW53 1432 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 OVOS2Q6IE36 1432 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 USP19O94966 1318 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 ACEP12821 1306 aa14.9□□□□□ -0.02
TRIM28-210ENST00000597618 ARHGEF28Q8N1W1 1705 aaKnown RBP14.89□□□□□ -0.03
TRIM28-210ENST00000597618 ABTB2Q8N961 1025 aa14.89□□□□□ -0.03
TRIM28-210ENST00000597618 CCDC61Q9Y6R9 512 aa14.89□□□□□ -0.03
TRIM28-210ENST00000597618 PARP4Q9UKK3 1724 aaKnown RBP14.89□□□□□ -0.03
TRIM28-210ENST00000597618 TOPAZ1Q8N9V7 1692 aa14.88□□□□□ -0.03
TRIM28-210ENST00000597618 CDK19Q9BWU1 502 aa14.88□□□□□ -0.03
TRIM28-210ENST00000597618 COL5A2P05997 1499 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-210ENST00000597618 RGPD3A6NKT7 1758 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-210ENST00000597618 RGPD4Q7Z3J3 1758 aa14.88□□□□□ -0.03
TRIM28-210ENST00000597618 PLEKHG3A1L390 1219 aa14.87□□□□□ -0.03
TRIM28-210ENST00000597618 CRB1P82279 1406 aa14.86□□□□□ -0.03
TRIM28-210ENST00000597618 PLSCR1O15162 318 aa14.86□□□□□ -0.03
TRIM28-210ENST00000597618 GCP02774 474 aa14.85□□□□□ -0.03
TRIM28-210ENST00000597618 NLRP13Q86W25 1043 aa14.85□□□□□ -0.03
TRIM28-210ENST00000597618 PEAK1Q9H792 1746 aa14.84□□□□□ -0.03
TRIM28-210ENST00000597618 ANO8Q9HCE9 1232 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-210ENST00000597618 RAB3GAP2Q9H2M9 1393 aa14.84□□□□□ -0.03
TRIM28-210ENST00000597618 BCL11BQ9C0K0 894 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-210ENST00000597618 BRD4O60885 1362 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-210ENST00000597618 CASZ1Q86V15 1759 aa14.83□□□□□ -0.04
TRIM28-210ENST00000597618 LRRC37A3O60309 1634 aa14.82□□□□□ -0.04
TRIM28-210ENST00000597618 DDB1Q16531 1140 aa14.82□□□□□ -0.04
TRIM28-210ENST00000597618 AATKQ6ZMQ8 1374 aa14.82□□□□□ -0.04
TRIM28-210ENST00000597618 PPIP5K1Q6PFW1 1433 aa14.81□□□□□ -0.04
TRIM28-210ENST00000597618 ZBTB7AO95365 584 aa14.8□□□□□ -0.04
TRIM28-210ENST00000597618 ZNF784Q8NCA9 323 aaPredicted RBP14.8□□□□□ -0.04
TRIM28-210ENST00000597618 BCL9O00512 1426 aa14.8□□□□□ -0.04
TRIM28-210ENST00000597618 ZBTB7CA1YPR0 619 aa14.79□□□□□ -0.04
TRIM28-210ENST00000597618 TOM1L2Q6ZVM7 507 aa14.79□□□□□ -0.04
TRIM28-210ENST00000597618 CDCA7Q9BWT1 371 aaPredicted RBP14.79□□□□□ -0.04
TRIM28-210ENST00000597618 MYOM1P52179 1685 aa14.78□□□□□ -0.04
TRIM28-210ENST00000597618 PTGER2P43116 358 aa14.78□□□□□ -0.04
TRIM28-210ENST00000597618 SRPK2P78362 688 aaKnown RBP14.78□□□□□ -0.04
TRIM28-210ENST00000597618 PDGFDQ9GZP0 370 aaPredicted RBP14.78□□□□□ -0.04
TRIM28-210ENST00000597618 SBF2Q86WG5 1849 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms