RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	BEGAIN	Q9BUH8	593 aa		7.86	□□□□□ -1.15
LRRC28-222	ENST00000561431	WASF2	Q9Y6W5	498 aa		7.86	□□□□□ -1.15
LRRC28-222	ENST00000561431	USP46	P62068	366 aa		7.85	□□□□□ -1.15
LRRC28-222	ENST00000561431	HOXA2	O43364	376 aa		7.84	□□□□□ -1.15
LRRC28-222	ENST00000561431	C14orf37	Q86TY3	774 aa		7.84	□□□□□ -1.15
LRRC28-222	ENST00000561431	FAM217B	Q9NTX9	383 aa	Predicted RBP	7.84	□□□□□ -1.15
LRRC28-222	ENST00000561431	PLEKHG3	A1L390	1219 aa		7.83	□□□□□ -1.16
LRRC28-222	ENST00000561431	GUCA2A	Q02747	115 aa		7.83	□□□□□ -1.16
LRRC28-222	ENST00000561431	SYMPK	Q92797	1274 aa	Known RBP	7.83	□□□□□ -1.16
LRRC28-222	ENST00000561431	PCMTD1	Q96MG8	357 aa	Predicted RBP	7.83	□□□□□ -1.16
LRRC28-222	ENST00000561431	RSPH6A	Q9H0K4	717 aa		7.83	□□□□□ -1.16
LRRC28-222	ENST00000561431	SH3BP2	P78314	561 aa		7.82	□□□□□ -1.16
LRRC28-222	ENST00000561431	NUDT12	Q9BQG2	462 aa		7.82	□□□□□ -1.16
LRRC28-222	ENST00000561431	VSIG8	P0DPA2	414 aa		7.81	□□□□□ -1.16
LRRC28-222	ENST00000561431	GSK3A	P49840	483 aa		7.79	□□□□□ -1.16
LRRC28-222	ENST00000561431	NUTM1	Q86Y26	1132 aa		7.79	□□□□□ -1.16
LRRC28-222	ENST00000561431	TLL2	Q9Y6L7	1015 aa		7.79	□□□□□ -1.16
LRRC28-222	ENST00000561431	KCNMA1	Q12791	1236 aa		7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	DIXDC1	Q155Q3	683 aa		7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	MRPL14	Q6P1L8	145 aa	Known RBP	7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	RETREG3	Q86VR2	466 aa		7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	POLR3E	Q9NVU0	708 aa		7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	TIMELESS	Q9UNS1	1208 aa		7.78	□□□□□ -1.16
LRRC28-222	ENST00000561431	SOBP	A7XYQ1	873 aa		7.77	□□□□□ -1.17
LRRC28-222	ENST00000561431	PURB	Q96QR8	312 aa	Known RBP	7.77	□□□□□ -1.17
LRRC28-222	ENST00000561431	GOPC	Q9HD26	462 aa		7.77	□□□□□ -1.17
LRRC28-222	ENST00000561431	CCNYL3	P0C7X3	344 aa		7.76	□□□□□ -1.17
LRRC28-222	ENST00000561431	SH3D19	Q5HYK7	790 aa		7.76	□□□□□ -1.17
LRRC28-222	ENST00000561431	KCTD17	Q8N5Z5	321 aa		7.76	□□□□□ -1.17
LRRC28-222	ENST00000561431	TBC1D2	Q9BYX2	928 aa		7.76	□□□□□ -1.17
LRRC28-222	ENST00000561431	TIMP2	P16035	220 aa		7.75	□□□□□ -1.17
LRRC28-222	ENST00000561431	NNT	Q13423	1086 aa		7.75	□□□□□ -1.17
LRRC28-222	ENST00000561431	SCARF1	Q14162	830 aa		7.75	□□□□□ -1.17
LRRC28-222	ENST00000561431	SKIV2L	Q15477	1246 aa	Known RBP	7.75	□□□□□ -1.17
LRRC28-222	ENST00000561431	LINC01559	Q495D7	138 aa		7.74	□□□□□ -1.17
LRRC28-222	ENST00000561431	MPND	Q8N594	471 aa		7.74	□□□□□ -1.17
LRRC28-222	ENST00000561431	UNC93B1	Q9H1C4	597 aa		7.74	□□□□□ -1.17
LRRC28-222	ENST00000561431	MYSM1	Q5VVJ2	828 aa		7.73	□□□□□ -1.17
LRRC28-222	ENST00000561431	BAP1	Q92560	729 aa		7.73	□□□□□ -1.17
LRRC28-222	ENST00000561431	KLF16	Q9BXK1	252 aa	Predicted RBP	7.73	□□□□□ -1.17
LRRC28-222	ENST00000561431	PCDHGC3	Q9UN70	934 aa		7.73	□□□□□ -1.17
LRRC28-222	ENST00000561431	CLK2	P49760	499 aa	Known RBP	7.72	□□□□□ -1.17
LRRC28-222	ENST00000561431	WDR4	P57081	412 aa	Known RBP	7.72	□□□□□ -1.17
LRRC28-222	ENST00000561431	PTPRN	Q16849	979 aa		7.72	□□□□□ -1.17
LRRC28-222	ENST00000561431	SPIRE2	Q8WWL2	714 aa		7.72	□□□□□ -1.17
LRRC28-222	ENST00000561431	EVA1B	Q9NVM1	165 aa		7.72	□□□□□ -1.17
LRRC28-222	ENST00000561431	ADH1C	P00326	375 aa		7.71	□□□□□ -1.18
LRRC28-222	ENST00000561431	VARS	P26640	1264 aa	Known RBP	7.71	□□□□□ -1.18
LRRC28-222	ENST00000561431	CSPP1	Q1MSJ5	1256 aa		7.71	□□□□□ -1.18
LRRC28-222	ENST00000561431	ZNF511	Q8NB15	262 aa		7.71	□□□□□ -1.18
LRRC28-222	ENST00000561431	PROCA1	Q8NCQ7	364 aa	Predicted RBP	7.71	□□□□□ -1.18
LRRC28-222	ENST00000561431	C6orf229	H3BNL8	230 aa		7.7	□□□□□ -1.18
LRRC28-222	ENST00000561431	FDX1	P10109	184 aa		7.7	□□□□□ -1.18
LRRC28-222	ENST00000561431	RIC3	Q7Z5B4	369 aa		7.7	□□□□□ -1.18
LRRC28-222	ENST00000561431	KCNH2	Q12809	1159 aa		7.69	□□□□□ -1.18
LRRC28-222	ENST00000561431	CCDC180	Q9P1Z9	1646 aa		7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	NUTM2B	A6NNL0	878 aa	Predicted RBP	7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	NUTM2E	B1AL46	878 aa	Predicted RBP	7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	PPFIA3	O75145	1194 aa		7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	NUTM2D	Q5VT03	806 aa	Predicted RBP	7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	NUTM2A	Q8IVF1	878 aa	Predicted RBP	7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	TMEM151A	Q8N4L1	468 aa		7.68	□□□□□ -1.18
LRRC28-222	ENST00000561431	MOXD2P	A6NHM9	499 aa		7.67	□□□□□ -1.18
LRRC28-222	ENST00000561431	MAN1A2	O60476	641 aa		7.67	□□□□□ -1.18
LRRC28-222	ENST00000561431	RASSF7	Q02833	373 aa		7.67	□□□□□ -1.18
LRRC28-222	ENST00000561431	FLII	Q13045	1269 aa		7.67	□□□□□ -1.18
LRRC28-222	ENST00000561431	ZFAND3	Q9H8U3	227 aa		7.67	□□□□□ -1.18
LRRC28-222	ENST00000561431	GDF11	O95390	407 aa		7.66	□□□□□ -1.18
LRRC28-222	ENST00000561431	NDUFV2	P19404	249 aa		7.66	□□□□□ -1.18
LRRC28-222	ENST00000561431	C6orf118	Q5T5N4	469 aa		7.66	□□□□□ -1.18
LRRC28-222	ENST00000561431	LIMD1	Q9UGP4	676 aa		7.66	□□□□□ -1.18
LRRC28-222	ENST00000561431	ZIC2	O95409	532 aa	Predicted RBP	7.65	□□□□□ -1.18
LRRC28-222	ENST00000561431	KRT76	Q01546	638 aa		7.65	□□□□□ -1.18
LRRC28-222	ENST00000561431	RSBN1L	Q6PCB5	846 aa	Predicted RBP	7.65	□□□□□ -1.18
LRRC28-222	ENST00000561431	ITPKC	Q96DU7	683 aa		7.65	□□□□□ -1.18
LRRC28-222	ENST00000561431	CDK15	Q96Q40	435 aa		7.65	□□□□□ -1.18
LRRC28-222	ENST00000561431	SPTLC1	O15269	473 aa		7.64	□□□□□ -1.19
LRRC28-222	ENST00000561431	PRR7	Q8TB68	274 aa		7.64	□□□□□ -1.19
LRRC28-222	ENST00000561431	FAM174A	Q8TBP5	190 aa		7.64	□□□□□ -1.19
LRRC28-222	ENST00000561431	GPR161	Q8N6U8	529 aa	Known RBP	7.63	□□□□□ -1.19
LRRC28-222	ENST00000561431	ADAMTS8	Q9UP79	889 aa		7.63	□□□□□ -1.19
LRRC28-222	ENST00000561431	NR3C2	P08235	984 aa		7.62	□□□□□ -1.19
LRRC28-222	ENST00000561431	DESI1	Q6ICB0	168 aa		7.62	□□□□□ -1.19
LRRC28-222	ENST00000561431	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	7.62	□□□□□ -1.19
LRRC28-222	ENST00000561431	DNMT3L	Q9UJW3	386 aa		7.62	□□□□□ -1.19
LRRC28-222	ENST00000561431	RNF225	M0QZC1	329 aa	Predicted RBP	7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	UBTF	P17480	764 aa	Known RBP	7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	GJA5	P36382	358 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	RFC5	P40937	340 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	ARID5B	Q14865	1188 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	TMEM259	Q4ZIN3	620 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	TSC1	Q92574	1164 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	FOXJ1	Q92949	421 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	ZBTB3	Q9H5J0	574 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	PCDHB15	Q9Y5E8	787 aa		7.61	□□□□□ -1.19
LRRC28-222	ENST00000561431	SOS2	Q07890	1332 aa	Predicted RBP	7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	AP1G2	O75843	785 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	BMP2	P12643	396 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	NR5A1	Q13285	461 aa		7.6	□□□□□ -1.19
LRRC28-222	ENST00000561431	QPCT	Q16769	361 aa		7.6	□□□□□ -1.19

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