RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 WASF2Q9Y6W5 498 aa9.76□□□□□ -0.85
SCFD1-219ENST00000556413 CTHP32929 405 aa9.75□□□□□ -0.85
SCFD1-219ENST00000556413 SENP2Q9HC62 589 aa9.75□□□□□ -0.85
SCFD1-219ENST00000556413 LIMD1Q9UGP4 676 aa9.75□□□□□ -0.85
SCFD1-219ENST00000556413 TLL2Q9Y6L7 1015 aa9.74□□□□□ -0.85
SCFD1-219ENST00000556413 F12P00748 615 aaPredicted RBP9.73□□□□□ -0.85
SCFD1-219ENST00000556413 VARSP26640 1264 aaKnown RBP9.73□□□□□ -0.85
SCFD1-219ENST00000556413 QPCTQ16769 361 aa9.73□□□□□ -0.85
SCFD1-219ENST00000556413 MAP10Q9P2G4 905 aa9.73□□□□□ -0.85
SCFD1-219ENST00000556413 TUSC1Q2TAM9 212 aa9.72□□□□□ -0.85
SCFD1-219ENST00000556413 PER1O15534 1290 aaPredicted RBP9.71□□□□□ -0.86
SCFD1-219ENST00000556413 MPNDQ8N594 471 aa9.71□□□□□ -0.86
SCFD1-219ENST00000556413 PLEKHG3A1L390 1219 aa9.7□□□□□ -0.86
SCFD1-219ENST00000556413 NUTM2BA6NNL0 878 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 NUTM2EB1AL46 878 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 CAPN5O15484 640 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 LILRB3O75022 631 aa9.7□□□□□ -0.86
SCFD1-219ENST00000556413 WFS1O76024 890 aa9.7□□□□□ -0.86
SCFD1-219ENST00000556413 NFX1Q12986 1120 aaKnown RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 NUTM2DQ5VT03 806 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 NUTM2AQ8IVF1 878 aaPredicted RBP9.7□□□□□ -0.86
SCFD1-219ENST00000556413 KIFC2Q96AC6 838 aa9.7□□□□□ -0.86
SCFD1-219ENST00000556413 BMP1P13497 986 aa9.69□□□□□ -0.86
SCFD1-219ENST00000556413 TRIM46Q7Z4K8 759 aa9.69□□□□□ -0.86
SCFD1-219ENST00000556413 TSC1Q92574 1164 aa9.69□□□□□ -0.86
SCFD1-219ENST00000556413 FOXJ1Q92949 421 aa9.69□□□□□ -0.86
SCFD1-219ENST00000556413 NNTQ13423 1086 aa9.67□□□□□ -0.86
SCFD1-219ENST00000556413 RTL5Q5HYW3 569 aaPredicted RBP9.67□□□□□ -0.86
SCFD1-219ENST00000556413 FAM174AQ8TBP5 190 aa9.67□□□□□ -0.86
SCFD1-219ENST00000556413 CLK2P49760 499 aaKnown RBP9.66□□□□□ -0.86
SCFD1-219ENST00000556413 C4orf48Q5BLP8 95 aa9.65□□□□□ -0.86
SCFD1-219ENST00000556413 CDK15Q96Q40 435 aa9.65□□□□□ -0.86
SCFD1-219ENST00000556413 POLR3EQ9NVU0 708 aa9.65□□□□□ -0.86
SCFD1-219ENST00000556413 TERTO14746 1132 aaKnown RBP9.64□□□□□ -0.87
SCFD1-219ENST00000556413 RSPH6AQ9H0K4 717 aa9.64□□□□□ -0.87
SCFD1-219ENST00000556413 ADH1CP00326 375 aa9.63□□□□□ -0.87
SCFD1-219ENST00000556413 LCE2CQ5TA81 110 aa9.63□□□□□ -0.87
SCFD1-219ENST00000556413 HELBQ8NG08 1087 aaPredicted RBP9.63□□□□□ -0.87
SCFD1-219ENST00000556413 TIMP2P16035 220 aa9.62□□□□□ -0.87
SCFD1-219ENST00000556413 WDR4P57081 412 aaKnown RBP9.62□□□□□ -0.87
SCFD1-219ENST00000556413 ARID5BQ14865 1188 aa9.62□□□□□ -0.87
SCFD1-219ENST00000556413 AGERQ15109 404 aa9.62□□□□□ -0.87
SCFD1-219ENST00000556413 BPHLQ86WA6 291 aaPredicted RBP9.62□□□□□ -0.87
SCFD1-219ENST00000556413 KLF16Q9BXK1 252 aaPredicted RBP9.62□□□□□ -0.87
SCFD1-219ENST00000556413 ZFP42Q96MM3 310 aa9.61□□□□□ -0.87
SCFD1-219ENST00000556413 WIPF1O43516 503 aa9.6□□□□□ -0.87
SCFD1-219ENST00000556413 ARMC2Q8NEN0 867 aa9.6□□□□□ -0.87
SCFD1-219ENST00000556413 GRM5P41594 1212 aa9.59□□□□□ -0.87
SCFD1-219ENST00000556413 MRPL14Q6P1L8 145 aaKnown RBP9.59□□□□□ -0.87
SCFD1-219ENST00000556413 SH3RF1Q7Z6J0 888 aa9.59□□□□□ -0.87
SCFD1-219ENST00000556413 GPBP1L1Q9HC44 474 aaPredicted RBP9.59□□□□□ -0.87
SCFD1-219ENST00000556413 CTDSPL2Q05D32 466 aa9.58□□□□□ -0.88
SCFD1-219ENST00000556413 NR5A1Q13285 461 aa9.58□□□□□ -0.88
SCFD1-219ENST00000556413 NR3C2P08235 984 aa9.57□□□□□ -0.88
SCFD1-219ENST00000556413 NBPF14Q5TI25 921 aa9.57□□□□□ -0.88
SCFD1-219ENST00000556413 FBXO31Q5XUX0 539 aaPredicted RBP9.57□□□□□ -0.88
SCFD1-219ENST00000556413 SH3BP5LQ7L8J4 393 aa9.57□□□□□ -0.88
SCFD1-219ENST00000556413 C1QTNF2Q9BXJ5 285 aa9.57□□□□□ -0.88
SCFD1-219ENST00000556413 KDM4CQ9H3R0 1056 aa9.57□□□□□ -0.88
SCFD1-219ENST00000556413 NXF1Q9UBU9 619 aaKnown RBP9.57□□□□□ -0.88
SCFD1-219ENST00000556413 SKIV2LQ15477 1246 aaKnown RBP9.56□□□□□ -0.88
SCFD1-219ENST00000556413 ITPKCQ96DU7 683 aa9.56□□□□□ -0.88
SCFD1-219ENST00000556413 PURBQ96QR8 312 aaKnown RBP9.56□□□□□ -0.88
SCFD1-219ENST00000556413 ZFAND3Q9H8U3 227 aa9.56□□□□□ -0.88
SCFD1-219ENST00000556413 ZIC2O95409 532 aaPredicted RBP9.55□□□□□ -0.88
SCFD1-219ENST00000556413 SCARF1Q14162 830 aa9.55□□□□□ -0.88
SCFD1-219ENST00000556413 FAM117AQ9C073 453 aa9.55□□□□□ -0.88
SCFD1-219ENST00000556413 SH3D19Q5HYK7 790 aa9.54□□□□□ -0.88
SCFD1-219ENST00000556413 PROCA1Q8NCQ7 364 aaPredicted RBP9.54□□□□□ -0.88
SCFD1-219ENST00000556413 BCANQ96GW7 911 aa9.54□□□□□ -0.88
SCFD1-219ENST00000556413 MAGEB6P1A0A0J9YX57 407 aa9.53□□□□□ -0.88
SCFD1-219ENST00000556413 TRMT44Q8IYL2 757 aaKnown RBP9.53□□□□□ -0.88
SCFD1-219ENST00000556413 SLC16A10Q8TF71 515 aa9.53□□□□□ -0.88
SCFD1-219ENST00000556413 LRRN4Q8WUT4 740 aa9.53□□□□□ -0.88
SCFD1-219ENST00000556413 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.53□□□□□ -0.88
SCFD1-219ENST00000556413 MAP4K5Q9Y4K4 846 aa9.53□□□□□ -0.88
SCFD1-219ENST00000556413 VEGFBP49765 207 aa9.52□□□□□ -0.89
SCFD1-219ENST00000556413 INSM1Q01101 510 aaPredicted RBP9.52□□□□□ -0.89
SCFD1-219ENST00000556413 NPAS3Q8IXF0 933 aa9.52□□□□□ -0.89
SCFD1-219ENST00000556413 GPKOWQ92917 476 aaPredicted RBP eCLIP9.52□□□□□ -0.89
SCFD1-219ENST00000556413 DDRGK1Q96HY6 314 aa9.52□□□□□ -0.89
SCFD1-219ENST00000556413 FSHRP23945 695 aa9.51□□□□□ -0.89
SCFD1-219ENST00000556413 VASH1Q7L8A9 365 aaPredicted RBP9.51□□□□□ -0.89
SCFD1-219ENST00000556413 SOBPA7XYQ1 873 aa9.5□□□□□ -0.89
SCFD1-219ENST00000556413 PPP2R2DQ66LE6 453 aa9.5□□□□□ -0.89
SCFD1-219ENST00000556413 CARD14Q9BXL6 1004 aa9.5□□□□□ -0.89
SCFD1-219ENST00000556413 H3BM21 787 aa9.49□□□□□ -0.89
SCFD1-219ENST00000556413 C6orf118Q5T5N4 469 aa9.49□□□□□ -0.89
SCFD1-219ENST00000556413 PDXDC2PQ6P474 469 aa9.49□□□□□ -0.89
SCFD1-219ENST00000556413 FKBPLQ9UIM3 349 aa9.49□□□□□ -0.89
SCFD1-219ENST00000556413 GMPRP36959 345 aa9.48□□□□□ -0.89
SCFD1-219ENST00000556413 ERFEQ4G0M1 354 aa9.48□□□□□ -0.89
SCFD1-219ENST00000556413 IRF7Q92985 503 aa9.48□□□□□ -0.89
SCFD1-219ENST00000556413 STK17AQ9UEE5 414 aa9.48□□□□□ -0.89
SCFD1-219ENST00000556413 ATP1B4Q9UN42 357 aaPredicted RBP9.48□□□□□ -0.89
SCFD1-219ENST00000556413 NR6A1Q15406 480 aa9.47□□□□□ -0.89
SCFD1-219ENST00000556413 MEIOBQ8N635 442 aa9.47□□□□□ -0.89
SCFD1-219ENST00000556413 AP1G2O75843 785 aa9.46□□□□□ -0.9
SCFD1-219ENST00000556413 CCDC116Q8IYX3 515 aa9.46□□□□□ -0.9
SCFD1-219ENST00000556413 LINC00528Q8N1L1 170 aa9.46□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms