RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 F12P00748 615 aaPredicted RBP10.46□□□□□ -0.73
SCFD1-217ENST00000555953 PER1O15534 1290 aaPredicted RBP10.45□□□□□ -0.74
SCFD1-217ENST00000555953 LILRB3O75022 631 aa10.45□□□□□ -0.74
SCFD1-217ENST00000555953 TUSC1Q2TAM9 212 aa10.45□□□□□ -0.74
SCFD1-217ENST00000555953 TLL2Q9Y6L7 1015 aa10.45□□□□□ -0.74
SCFD1-217ENST00000555953 WASF2Q9Y6W5 498 aa10.44□□□□□ -0.74
SCFD1-217ENST00000555953 NUTM2BA6NNL0 878 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-217ENST00000555953 NUTM2EB1AL46 878 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-217ENST00000555953 NUTM2DQ5VT03 806 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-217ENST00000555953 NUTM2AQ8IVF1 878 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-217ENST00000555953 CLK2P49760 499 aaKnown RBP10.42□□□□□ -0.74
SCFD1-217ENST00000555953 RTL5Q5HYW3 569 aaPredicted RBP10.42□□□□□ -0.74
SCFD1-217ENST00000555953 TSC1Q92574 1164 aa10.42□□□□□ -0.74
SCFD1-217ENST00000555953 SNRPBP14678 240 aaKnown RBP10.41□□□□□ -0.74
SCFD1-217ENST00000555953 VARSP26640 1264 aaKnown RBP10.41□□□□□ -0.74
SCFD1-217ENST00000555953 POLR3EQ9NVU0 708 aa10.41□□□□□ -0.74
SCFD1-217ENST00000555953 FOXJ1Q92949 421 aa10.4□□□□□ -0.74
SCFD1-217ENST00000555953 BCANQ96GW7 911 aa10.4□□□□□ -0.74
SCFD1-217ENST00000555953 TRIM47Q96LD4 638 aa10.4□□□□□ -0.74
SCFD1-217ENST00000555953 LCE2AQ5TA79 106 aaPredicted RBP10.39□□□□□ -0.75
SCFD1-217ENST00000555953 TREML4Q6UXN2 200 aa10.39□□□□□ -0.75
SCFD1-217ENST00000555953 RSPH6AQ9H0K4 717 aa10.39□□□□□ -0.75
SCFD1-217ENST00000555953 SENP2Q9HC62 589 aa10.39□□□□□ -0.75
SCFD1-217ENST00000555953 MPNDQ8N594 471 aa10.38□□□□□ -0.75
SCFD1-217ENST00000555953 GPBP1L1Q9HC44 474 aaPredicted RBP10.38□□□□□ -0.75
SCFD1-217ENST00000555953 CAPN5O15484 640 aaPredicted RBP10.37□□□□□ -0.75
SCFD1-217ENST00000555953 BMP1P13497 986 aa10.37□□□□□ -0.75
SCFD1-217ENST00000555953 PLEKHG3A1L390 1219 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 NNTQ13423 1086 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 C4orf48Q5BLP8 95 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 TRIM46Q7Z4K8 759 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 HELBQ8NG08 1087 aaPredicted RBP10.36□□□□□ -0.75
SCFD1-217ENST00000555953 FAM174AQ8TBP5 190 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 KDM4CQ9H3R0 1056 aa10.36□□□□□ -0.75
SCFD1-217ENST00000555953 KIFC2Q96AC6 838 aa10.34□□□□□ -0.75
SCFD1-217ENST00000555953 SLC24A1O60721 1099 aa10.33□□□□□ -0.76
SCFD1-217ENST00000555953 FBXO31Q5XUX0 539 aaPredicted RBP10.33□□□□□ -0.76
SCFD1-217ENST00000555953 FAM117AQ9C073 453 aa10.33□□□□□ -0.76
SCFD1-217ENST00000555953 ADH1CP00326 375 aa10.32□□□□□ -0.76
SCFD1-217ENST00000555953 NFX1Q12986 1120 aaKnown RBP10.32□□□□□ -0.76
SCFD1-217ENST00000555953 AGERQ15109 404 aa10.32□□□□□ -0.76
SCFD1-217ENST00000555953 CDK15Q96Q40 435 aa10.32□□□□□ -0.76
SCFD1-217ENST00000555953 WFS1O76024 890 aa10.31□□□□□ -0.76
SCFD1-217ENST00000555953 CTDSPL2Q05D32 466 aa10.31□□□□□ -0.76
SCFD1-217ENST00000555953 SKIV2LQ15477 1246 aaKnown RBP10.31□□□□□ -0.76
SCFD1-217ENST00000555953 SH3D19Q5HYK7 790 aa10.31□□□□□ -0.76
SCFD1-217ENST00000555953 BPHLQ86WA6 291 aaPredicted RBP10.31□□□□□ -0.76
SCFD1-217ENST00000555953 TIMP2P16035 220 aa10.3□□□□□ -0.76
SCFD1-217ENST00000555953 ARID5BQ14865 1188 aa10.3□□□□□ -0.76
SCFD1-217ENST00000555953 PROCA1Q8NCQ7 364 aaPredicted RBP10.3□□□□□ -0.76
SCFD1-217ENST00000555953 ARMC2Q8NEN0 867 aa10.3□□□□□ -0.76
SCFD1-217ENST00000555953 WDR4P57081 412 aaKnown RBP10.29□□□□□ -0.76
SCFD1-217ENST00000555953 NBPF14Q5TI25 921 aa10.29□□□□□ -0.76
SCFD1-217ENST00000555953 SH3RF1Q7Z6J0 888 aa10.29□□□□□ -0.76
SCFD1-217ENST00000555953 DDRGK1Q96HY6 314 aa10.29□□□□□ -0.76
SCFD1-217ENST00000555953 KLF16Q9BXK1 252 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-217ENST00000555953 NR3C2P08235 984 aa10.28□□□□□ -0.76
SCFD1-217ENST00000555953 SH3BP5LQ7L8J4 393 aa10.28□□□□□ -0.76
SCFD1-217ENST00000555953 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.28□□□□□ -0.76
SCFD1-217ENST00000555953 C1QTNF2Q9BXJ5 285 aa10.28□□□□□ -0.76
SCFD1-217ENST00000555953 TERTO14746 1132 aaKnown RBP10.27□□□□□ -0.77
SCFD1-217ENST00000555953 GRM5P41594 1212 aa10.27□□□□□ -0.77
SCFD1-217ENST00000555953 LCE2CQ5TA81 110 aa10.27□□□□□ -0.77
SCFD1-217ENST00000555953 LRRN4Q8WUT4 740 aa10.27□□□□□ -0.77
SCFD1-217ENST00000555953 ZFP42Q96MM3 310 aa10.26□□□□□ -0.77
SCFD1-217ENST00000555953 NR5A1Q13285 461 aa10.25□□□□□ -0.77
SCFD1-217ENST00000555953 ZFAND3Q9H8U3 227 aa10.25□□□□□ -0.77
SCFD1-217ENST00000555953 MAGEB6P1A0A0J9YX57 407 aa10.24□□□□□ -0.77
SCFD1-217ENST00000555953 PPP2R2DQ66LE6 453 aa10.24□□□□□ -0.77
SCFD1-217ENST00000555953 MRPL14Q6P1L8 145 aaKnown RBP10.24□□□□□ -0.77
SCFD1-217ENST00000555953 ITPKCQ96DU7 683 aa10.24□□□□□ -0.77
SCFD1-217ENST00000555953 ZIC2O95409 532 aaPredicted RBP10.23□□□□□ -0.77
SCFD1-217ENST00000555953 TRMT44Q8IYL2 757 aaKnown RBP10.23□□□□□ -0.77
SCFD1-217ENST00000555953 GPKOWQ92917 476 aaPredicted RBP eCLIP10.22□□□□□ -0.77
SCFD1-217ENST00000555953 PURBQ96QR8 312 aaKnown RBP10.22□□□□□ -0.77
SCFD1-217ENST00000555953 CARD14Q9BXL6 1004 aa10.22□□□□□ -0.77
SCFD1-217ENST00000555953 ATP1B4Q9UN42 357 aaPredicted RBP10.22□□□□□ -0.77
SCFD1-217ENST00000555953 FSHRP23945 695 aa10.21□□□□□ -0.77
SCFD1-217ENST00000555953 MAP4K5Q9Y4K4 846 aa10.21□□□□□ -0.77
SCFD1-217ENST00000555953 SCARF1Q14162 830 aa10.2□□□□□ -0.78
SCFD1-217ENST00000555953 NR6A1Q15406 480 aa10.2□□□□□ -0.78
SCFD1-217ENST00000555953 ERFEQ4G0M1 354 aa10.2□□□□□ -0.78
SCFD1-217ENST00000555953 VASH1Q7L8A9 365 aaPredicted RBP10.2□□□□□ -0.78
SCFD1-217ENST00000555953 FKBPLQ9UIM3 349 aa10.2□□□□□ -0.78
SCFD1-217ENST00000555953 WIPF1O43516 503 aa10.19□□□□□ -0.78
SCFD1-217ENST00000555953 AP1G2O75843 785 aa10.19□□□□□ -0.78
SCFD1-217ENST00000555953 NXF1Q9UBU9 619 aaKnown RBP10.19□□□□□ -0.78
SCFD1-217ENST00000555953 PDXDC2PQ6P474 469 aa10.18□□□□□ -0.78
SCFD1-217ENST00000555953 ARHGAP9Q9BRR9 750 aa10.17□□□□□ -0.78
SCFD1-217ENST00000555953 SOBPA7XYQ1 873 aa10.16□□□□□ -0.78
SCFD1-217ENST00000555953 VEGFBP49765 207 aa10.16□□□□□ -0.78
SCFD1-217ENST00000555953 EPS8L1Q8TE68 723 aa10.16□□□□□ -0.78
SCFD1-217ENST00000555953 C6orf118Q5T5N4 469 aa10.15□□□□□ -0.78
SCFD1-217ENST00000555953 MEIOBQ8N635 442 aa10.15□□□□□ -0.78
SCFD1-217ENST00000555953 OCSTAMPQ9BR26 566 aa10.15□□□□□ -0.78
SCFD1-217ENST00000555953 HMX1Q9NP08 348 aaPredicted RBP10.15□□□□□ -0.78
SCFD1-217ENST00000555953 ZC3H4Q9UPT8 1303 aaKnown RBP10.14□□□□□ -0.79
SCFD1-217ENST00000555953 USP17L8P0C7I0 530 aa10.14□□□□□ -0.79
SCFD1-217ENST00000555953 CCDC116Q8IYX3 515 aa10.14□□□□□ -0.79
SCFD1-217ENST00000555953 SLC16A10Q8TF71 515 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms