RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 ANKRD30AQ9BXX3 1397 aa12.78□□□□□ -0.36
USP48-212ENST00000527823 DCCP43146 1447 aa12.78□□□□□ -0.36
USP48-212ENST00000527823 PTPRUQ92729 1446 aa12.77□□□□□ -0.37
USP48-212ENST00000527823 IQGAP3Q86VI3 1631 aa12.77□□□□□ -0.37
USP48-212ENST00000527823 SLC52A1Q9NWF4 448 aa12.76□□□□□ -0.37
USP48-212ENST00000527823 SETD5Q9C0A6 1442 aa12.76□□□□□ -0.37
USP48-212ENST00000527823 LAMC1P11047 1609 aa12.75□□□□□ -0.37
USP48-212ENST00000527823 AFF2P51816 1311 aa12.75□□□□□ -0.37
USP48-212ENST00000527823 MST1RQ04912 1400 aa12.75□□□□□ -0.37
USP48-212ENST00000527823 BCANQ96GW7 911 aa12.75□□□□□ -0.37
USP48-212ENST00000527823 PIK3R4Q99570 1358 aa12.75□□□□□ -0.37
USP48-212ENST00000527823 SETBP1Q9Y6X0 1596 aa12.74□□□□□ -0.37
USP48-212ENST00000527823 RXRBP28702 533 aa12.74□□□□□ -0.37
USP48-212ENST00000527823 BRINP3Q76B58 766 aa12.74□□□□□ -0.37
USP48-212ENST00000527823 PPP1R15AO75807 674 aaPredicted RBP12.73□□□□□ -0.37
USP48-212ENST00000527823 C14orf37Q86TY3 774 aa12.73□□□□□ -0.37
USP48-212ENST00000527823 ANKRD50Q9ULJ7 1429 aa12.72□□□□□ -0.37
USP48-212ENST00000527823 TBX22Q9Y458 520 aa12.72□□□□□ -0.37
USP48-212ENST00000527823 PNPLA6Q8IY17 1366 aa12.71□□□□□ -0.37
USP48-212ENST00000527823 NUTM2BA6NNL0 878 aaPredicted RBP12.71□□□□□ -0.37
USP48-212ENST00000527823 NUTM2EB1AL46 878 aaPredicted RBP12.71□□□□□ -0.37
USP48-212ENST00000527823 NUTM2AQ8IVF1 878 aaPredicted RBP12.71□□□□□ -0.37
USP48-212ENST00000527823 MICALL2Q8IY33 904 aa12.71□□□□□ -0.37
USP48-212ENST00000527823 CHIC2Q9UKJ5 165 aa12.71□□□□□ -0.37
USP48-212ENST00000527823 BOLA1Q9Y3E2 137 aa12.71□□□□□ -0.37
USP48-212ENST00000527823 SPHKAPQ2M3C7 1700 aa12.71□□□□□ -0.38
USP48-212ENST00000527823 C19orf44Q9H6X5 657 aa12.7□□□□□ -0.38
USP48-212ENST00000527823 COL22A1Q8NFW1 1626 aaPredicted RBP12.7□□□□□ -0.38
USP48-212ENST00000527823 MARF1Q9Y4F3 1742 aaKnown RBP12.69□□□□□ -0.38
USP48-212ENST00000527823 ATF3P18847 181 aa12.69□□□□□ -0.38
USP48-212ENST00000527823 ADGRL3Q9HAR2 1447 aa12.69□□□□□ -0.38
USP48-212ENST00000527823 G3V3G9 751 aa12.68□□□□□ -0.38
USP48-212ENST00000527823 NUTM2DQ5VT03 806 aaPredicted RBP12.68□□□□□ -0.38
USP48-212ENST00000527823 L3MBTL3Q96JM7 780 aaPredicted RBP12.68□□□□□ -0.38
USP48-212ENST00000527823 C8orf37Q96NL8 207 aa12.66□□□□□ -0.38
USP48-212ENST00000527823 ATAD2Q6PL18 1390 aa12.66□□□□□ -0.38
USP48-212ENST00000527823 RBM6P78332 1123 aaKnown RBP12.65□□□□□ -0.38
USP48-212ENST00000527823 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.65□□□□□ -0.38
USP48-212ENST00000527823 TMEM121BQ9BXQ6 578 aaPredicted RBP12.65□□□□□ -0.38
USP48-212ENST00000527823 NEXMIFQ5QGS0 1516 aa12.65□□□□□ -0.38
USP48-212ENST00000527823 DDX17Q92841 729 aaKnown RBP12.64□□□□□ -0.39
USP48-212ENST00000527823 AMOTL2Q9Y2J4 779 aa12.64□□□□□ -0.39
USP48-212ENST00000527823 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.64□□□□□ -0.39
USP48-212ENST00000527823 CLTCL1P53675 1640 aa12.63□□□□□ -0.39
USP48-212ENST00000527823 ATRNO75882 1429 aa12.62□□□□□ -0.39
USP48-212ENST00000527823 LRP5O75197 1615 aa12.62□□□□□ -0.39
USP48-212ENST00000527823 C1orf167Q5SNV9 1468 aa12.62□□□□□ -0.39
USP48-212ENST00000527823 METP08581 1390 aa12.62□□□□□ -0.39
USP48-212ENST00000527823 HDGFP51858 240 aaKnown RBP12.62□□□□□ -0.39
USP48-212ENST00000527823 QTRT2Q9H974 415 aaKnown RBP12.61□□□□□ -0.39
USP48-212ENST00000527823 MYOM2P54296 1465 aa12.6□□□□□ -0.39
USP48-212ENST00000527823 PDE4AP27815 886 aa12.6□□□□□ -0.39
USP48-212ENST00000527823 LRRC59Q96AG4 307 aaKnown RBP12.6□□□□□ -0.39
USP48-212ENST00000527823 LARP6Q9BRS8 491 aaKnown RBP12.6□□□□□ -0.39
USP48-212ENST00000527823 WDR70Q9NW82 654 aa12.6□□□□□ -0.39
USP48-212ENST00000527823 PTCH1Q13635 1447 aa12.6□□□□□ -0.39
USP48-212ENST00000527823 BRWD3Q6RI45 1802 aa12.6□□□□□ -0.39
USP48-212ENST00000527823 CRISPLD2Q9H0B8 497 aa12.59□□□□□ -0.39
USP48-212ENST00000527823 ADAMTS2O95450 1211 aa12.58□□□□□ -0.4
USP48-212ENST00000527823 GLI3P10071 1580 aa12.58□□□□□ -0.4
USP48-212ENST00000527823 PRAG1Q86YV5 1406 aa12.58□□□□□ -0.4
USP48-212ENST00000527823 KIF1BO60333 1816 aa12.58□□□□□ -0.4
USP48-212ENST00000527823 CDC42BPGQ6DT37 1551 aa12.57□□□□□ -0.4
USP48-212ENST00000527823 LOC105371045A0A1W2PR82 267 aa12.57□□□□□ -0.4
USP48-212ENST00000527823 POTEB2H3BUK9 544 aa12.57□□□□□ -0.4
USP48-212ENST00000527823 NGLY1Q96IV0 654 aa12.56□□□□□ -0.4
USP48-212ENST00000527823 PXDNQ92626 1479 aa12.56□□□□□ -0.4
USP48-212ENST00000527823 SOS2Q07890 1332 aaPredicted RBP12.56□□□□□ -0.4
USP48-212ENST00000527823 BCL9LQ86UU0 1499 aa12.55□□□□□ -0.4
USP48-212ENST00000527823 USP21Q9UK80 565 aa12.55□□□□□ -0.4
USP48-212ENST00000527823 ROCK1Q13464 1354 aa12.55□□□□□ -0.4
USP48-212ENST00000527823 ABCA3Q99758 1704 aa12.54□□□□□ -0.4
USP48-212ENST00000527823 FAM50AQ14320 339 aaKnown RBP12.54□□□□□ -0.4
USP48-212ENST00000527823 TMEM92Q6UXU6 159 aa12.54□□□□□ -0.4
USP48-212ENST00000527823 C3orf67Q6ZVT6 689 aa12.54□□□□□ -0.4
USP48-212ENST00000527823 TMC2Q8TDI7 906 aa12.54□□□□□ -0.4
USP48-212ENST00000527823 GPHNQ9NQX3 736 aaPredicted RBP12.54□□□□□ -0.4
USP48-212ENST00000527823 TRPC5Q9UL62 973 aaPredicted RBP12.54□□□□□ -0.4
USP48-212ENST00000527823 PPLO60437 1756 aa12.53□□□□□ -0.4
USP48-212ENST00000527823 USP32Q8NFA0 1604 aa12.53□□□□□ -0.4
USP48-212ENST00000527823 POTEJP0CG39 1038 aa12.53□□□□□ -0.4
USP48-212ENST00000527823 FNBP4Q8N3X1 1017 aaPredicted RBP12.53□□□□□ -0.4
USP48-212ENST00000527823 DDX27Q96GQ7 796 aaKnown RBP12.53□□□□□ -0.4
USP48-212ENST00000527823 PLCH1Q4KWH8 1693 aa12.53□□□□□ -0.4
USP48-212ENST00000527823 ROBO2Q9HCK4 1378 aa12.53□□□□□ -0.4
USP48-212ENST00000527823 C2orf72A6NCS6 295 aa12.52□□□□□ -0.41
USP48-212ENST00000527823 MFSD10Q14728 455 aa12.52□□□□□ -0.41
USP48-212ENST00000527823 NUP155O75694 1391 aa12.51□□□□□ -0.41
USP48-212ENST00000527823 ORAI2Q96SN7 254 aa12.5□□□□□ -0.41
USP48-212ENST00000527823 BLMP54132 1417 aaPredicted RBP12.5□□□□□ -0.41
USP48-212ENST00000527823 RALGAPBQ86X10 1494 aa12.5□□□□□ -0.41
USP48-212ENST00000527823 KNDC1Q76NI1 1749 aa12.49□□□□□ -0.41
USP48-212ENST00000527823 FMN2Q9NZ56 1722 aa12.49□□□□□ -0.41
USP48-212ENST00000527823 DSG2Q14126 1118 aa12.49□□□□□ -0.41
USP48-212ENST00000527823 NWD2Q9ULI1 1742 aa12.48□□□□□ -0.41
USP48-212ENST00000527823 KIF1AQ12756 1690 aa12.48□□□□□ -0.41
USP48-212ENST00000527823 SLIT2O94813 1529 aa12.48□□□□□ -0.41
USP48-212ENST00000527823 KIF3CO14782 793 aa12.48□□□□□ -0.41
USP48-212ENST00000527823 PPP1R15BQ5SWA1 713 aa12.48□□□□□ -0.41
USP48-212ENST00000527823 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms