RNA–Protein interactions for RNA: ENST00000524922.1

CD44-212, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 352 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-212ENST00000524922 MPNDQ8N594 471 aa4.71□□□□□ -1.66
CD44-212ENST00000524922 ZNF511Q8NB15 262 aa4.71□□□□□ -1.66
CD44-212ENST00000524922 BAP1Q92560 729 aa4.71□□□□□ -1.66
CD44-212ENST00000524922 SLC24A3Q9HC58 644 aa4.71□□□□□ -1.66
CD44-212ENST00000524922 C11orf95C9JLR9 678 aaPredicted RBP4.7□□□□□ -1.66
CD44-212ENST00000524922 LILRB3O75022 631 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 ALDH1A1P00352 501 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 LINC01559Q495D7 138 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 C4orf48Q5BLP8 95 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 EHBP1Q8NDI1 1231 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 MAP10Q9P2G4 905 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 TLL2Q9Y6L7 1015 aa4.7□□□□□ -1.66
CD44-212ENST00000524922 DIXDC1Q155Q3 683 aa4.69□□□□□ -1.66
CD44-212ENST00000524922 ZBTB3Q9H5J0 574 aa4.69□□□□□ -1.66
CD44-212ENST00000524922 RTL5Q5HYW3 569 aaPredicted RBP4.68□□□□□ -1.66
CD44-212ENST00000524922 FOXJ1Q92949 421 aa4.68□□□□□ -1.66
CD44-212ENST00000524922 CDK15Q96Q40 435 aa4.68□□□□□ -1.66
CD44-212ENST00000524922 WIPF1O43516 503 aa4.67□□□□□ -1.66
CD44-212ENST00000524922 BMP1P13497 986 aa4.67□□□□□ -1.66
CD44-212ENST00000524922 VARSP26640 1264 aaKnown RBP4.67□□□□□ -1.66
CD44-212ENST00000524922 SH3RF1Q7Z6J0 888 aa4.67□□□□□ -1.66
CD44-212ENST00000524922 TIMP2P16035 220 aa4.66□□□□□ -1.66
CD44-212ENST00000524922 GRM5P41594 1212 aa4.66□□□□□ -1.66
CD44-212ENST00000524922 C1QTNF2Q9BXJ5 285 aa4.66□□□□□ -1.66
CD44-212ENST00000524922 TERTO14746 1132 aaKnown RBP4.65□□□□□ -1.67
CD44-212ENST00000524922 CAPN5O15484 640 aaPredicted RBP4.65□□□□□ -1.67
CD44-212ENST00000524922 WFS1O76024 890 aa4.65□□□□□ -1.67
CD44-212ENST00000524922 NR3C2P08235 984 aa4.65□□□□□ -1.67
CD44-212ENST00000524922 LORP23490 312 aaPredicted RBP4.65□□□□□ -1.67
CD44-212ENST00000524922 CSPP1Q1MSJ5 1256 aa4.65□□□□□ -1.67
CD44-212ENST00000524922 SENP2Q9HC62 589 aa4.65□□□□□ -1.67
CD44-212ENST00000524922 PLEKHG3A1L390 1219 aa4.64□□□□□ -1.67
CD44-212ENST00000524922 ADH1CP00326 375 aa4.64□□□□□ -1.67
CD44-212ENST00000524922 CLK2P49760 499 aaKnown RBP4.64□□□□□ -1.67
CD44-212ENST00000524922 NNTQ13423 1086 aa4.64□□□□□ -1.67
CD44-212ENST00000524922 SH3BP5LQ7L8J4 393 aa4.64□□□□□ -1.67
CD44-212ENST00000524922 KIFC2Q96AC6 838 aa4.64□□□□□ -1.67
CD44-212ENST00000524922 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.64□□□□□ -1.67
CD44-212ENST00000524922 CTHP32929 405 aa4.63□□□□□ -1.67
CD44-212ENST00000524922 ZFP42Q96MM3 310 aa4.63□□□□□ -1.67
CD44-212ENST00000524922 GPBP1L1Q9HC44 474 aaPredicted RBP4.63□□□□□ -1.67
CD44-212ENST00000524922 WASF2Q9Y6W5 498 aa4.63□□□□□ -1.67
CD44-212ENST00000524922 CTDSPL2Q05D32 466 aa4.62□□□□□ -1.67
CD44-212ENST00000524922 PPP2R2DQ66LE6 453 aa4.62□□□□□ -1.67
CD44-212ENST00000524922 TRMT44Q8IYL2 757 aaKnown RBP4.62□□□□□ -1.67
CD44-212ENST00000524922 OCSTAMPQ9BR26 566 aa4.62□□□□□ -1.67
CD44-212ENST00000524922 FAM117AQ9C073 453 aa4.62□□□□□ -1.67
CD44-212ENST00000524922 POLR3EQ9NVU0 708 aa4.62□□□□□ -1.67
CD44-212ENST00000524922 SH3D19Q5HYK7 790 aa4.61□□□□□ -1.67
CD44-212ENST00000524922 PROCA1Q8NCQ7 364 aaPredicted RBP4.61□□□□□ -1.67
CD44-212ENST00000524922 FAM174AQ8TBP5 190 aa4.61□□□□□ -1.67
CD44-212ENST00000524922 ITPKCQ96DU7 683 aa4.61□□□□□ -1.67
CD44-212ENST00000524922 ZFAND3Q9H8U3 227 aa4.61□□□□□ -1.67
CD44-212ENST00000524922 MAP4K5Q9Y4K4 846 aa4.61□□□□□ -1.67
CD44-212ENST00000524922 NUTM2BA6NNL0 878 aaPredicted RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 NUTM2EB1AL46 878 aaPredicted RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 H3BM21 787 aa4.6□□□□□ -1.67
CD44-212ENST00000524922 WDR4P57081 412 aaKnown RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 SKIV2LQ15477 1246 aaKnown RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 NUTM2DQ5VT03 806 aaPredicted RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 MRPL14Q6P1L8 145 aaKnown RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 BPHLQ86WA6 291 aaPredicted RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 NUTM2AQ8IVF1 878 aaPredicted RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 NPAS3Q8IXF0 933 aa4.6□□□□□ -1.67
CD44-212ENST00000524922 RSPH6AQ9H0K4 717 aa4.6□□□□□ -1.67
CD44-212ENST00000524922 KDM4CQ9H3R0 1056 aa4.6□□□□□ -1.67
CD44-212ENST00000524922 NXF1Q9UBU9 619 aaKnown RBP4.6□□□□□ -1.67
CD44-212ENST00000524922 ERBB4Q15303 1308 aa4.6□□□□□ -1.67
CD44-212ENST00000524922 NR5A1Q13285 461 aa4.59□□□□□ -1.67
CD44-212ENST00000524922 MEIOBQ8N635 442 aa4.59□□□□□ -1.67
CD44-212ENST00000524922 LRRN4Q8WUT4 740 aa4.59□□□□□ -1.67
CD44-212ENST00000524922 SOBPA7XYQ1 873 aa4.58□□□□□ -1.68
CD44-212ENST00000524922 ZIC2O95409 532 aaPredicted RBP4.58□□□□□ -1.68
CD44-212ENST00000524922 ERFEQ4G0M1 354 aa4.58□□□□□ -1.68
CD44-212ENST00000524922 HELBQ8NG08 1087 aaPredicted RBP4.58□□□□□ -1.68
CD44-212ENST00000524922 PURBQ96QR8 312 aaKnown RBP4.58□□□□□ -1.68
CD44-212ENST00000524922 VSIG8P0DPA2 414 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 GMPRP36959 345 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 VEGFBP49765 207 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 NBPF14Q5TI25 921 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 ARMC2Q8NEN0 867 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 EPS8L1Q8TE68 723 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 TSC1Q92574 1164 aa4.57□□□□□ -1.68
CD44-212ENST00000524922 GPKOWQ92917 476 aaPredicted RBP eCLIP4.57□□□□□ -1.68
CD44-212ENST00000524922 HMX1Q9NP08 348 aaPredicted RBP4.57□□□□□ -1.68
CD44-212ENST00000524922 FSHRP23945 695 aa4.56□□□□□ -1.68
CD44-212ENST00000524922 ARID5BQ14865 1188 aa4.56□□□□□ -1.68
CD44-212ENST00000524922 PDXDC2PQ6P474 469 aa4.56□□□□□ -1.68
CD44-212ENST00000524922 FKBPLQ9UIM3 349 aa4.56□□□□□ -1.68
CD44-212ENST00000524922 SOS2Q07890 1332 aaPredicted RBP4.55□□□□□ -1.68
CD44-212ENST00000524922 NR6A1Q15406 480 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 Q6ZVU0 165 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 LINC00528Q8N1L1 170 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 DDRGK1Q96HY6 314 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 STK17AQ9UEE5 414 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 DNMT3LQ9UJW3 386 aa4.55□□□□□ -1.68
CD44-212ENST00000524922 MAGEB6P1A0A0J9YX57 407 aa4.54□□□□□ -1.68
CD44-212ENST00000524922 INSM1Q01101 510 aaPredicted RBP4.54□□□□□ -1.68
CD44-212ENST00000524922 AGERQ15109 404 aa4.54□□□□□ -1.68
CD44-212ENST00000524922 CCDC116Q8IYX3 515 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms