RNA–Protein interactions for RNA: ENST00000511426.5

SCLT1-209, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 1,696 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-209ENST00000511426 NGEFQ8N5V2 710 aa20.29■□□□□ 0.84
SCLT1-209ENST00000511426 COG3Q96JB2 828 aa20.29■□□□□ 0.84
SCLT1-209ENST00000511426 LRRC7Q96NW7 1537 aa20.28■□□□□ 0.84
SCLT1-209ENST00000511426 SMG6Q86US8 1419 aaKnown RBP20.28■□□□□ 0.84
SCLT1-209ENST00000511426 NGDNQ8NEJ9 315 aaKnown RBP20.28■□□□□ 0.84
SCLT1-209ENST00000511426 PNPLA6Q8IY17 1366 aa20.27■□□□□ 0.84
SCLT1-209ENST00000511426 DMRT2Q9Y5R5 561 aa20.27■□□□□ 0.84
SCLT1-209ENST00000511426 OVOS2A0A0J9YW53 1432 aa20.27■□□□□ 0.84
SCLT1-209ENST00000511426 OVOS2Q6IE36 1432 aa20.27■□□□□ 0.84
SCLT1-209ENST00000511426 C14orf37Q86TY3 774 aa20.26■□□□□ 0.83
SCLT1-209ENST00000511426 USP31Q70CQ4 1352 aa20.26■□□□□ 0.83
SCLT1-209ENST00000511426 ADAMTS8Q9UP79 889 aa20.26■□□□□ 0.83
SCLT1-209ENST00000511426 NUTM2FA1L443 756 aa20.25■□□□□ 0.83
SCLT1-209ENST00000511426 PHF8Q9UPP1 1060 aa20.25■□□□□ 0.83
SCLT1-209ENST00000511426 RGPD8O14715 1765 aaPredicted RBP20.24■□□□□ 0.83
SCLT1-209ENST00000511426 TNNT2P45379 298 aaPredicted RBP20.24■□□□□ 0.83
SCLT1-209ENST00000511426 KIF1AQ12756 1690 aa20.24■□□□□ 0.83
SCLT1-209ENST00000511426 SHPRHQ149N8 1683 aa20.24■□□□□ 0.83
SCLT1-209ENST00000511426 USP54Q70EL1 1684 aa20.24■□□□□ 0.83
SCLT1-209ENST00000511426 TMEM94Q12767 1356 aa20.24■□□□□ 0.83
SCLT1-209ENST00000511426 PDE3BQ13370 1112 aa20.23■□□□□ 0.83
SCLT1-209ENST00000511426 NME9Q86XW9 330 aa20.23■□□□□ 0.83
SCLT1-209ENST00000511426 COL3A1P02461 1466 aaPredicted RBP20.23■□□□□ 0.83
SCLT1-209ENST00000511426 CDK12Q9NYV4 1490 aaPredicted RBP20.23■□□□□ 0.83
SCLT1-209ENST00000511426 STRCP1A6NGW2 1772 aa20.23■□□□□ 0.83
SCLT1-209ENST00000511426 NUDCQ9Y266 331 aa20.22■□□□□ 0.83
SCLT1-209ENST00000511426 PMFBP1Q8TBY8 1022 aa20.22■□□□□ 0.83
SCLT1-209ENST00000511426 NCBP3Q53F19 620 aaKnown RBP20.21■□□□□ 0.83
SCLT1-209ENST00000511426 CADPS2Q86UW7 1296 aa20.2■□□□□ 0.82
SCLT1-209ENST00000511426 MSH6P52701 1360 aa20.19■□□□□ 0.82
SCLT1-209ENST00000511426 C1orf167Q5SNV9 1468 aa20.19■□□□□ 0.82
SCLT1-209ENST00000511426 ATF3P18847 181 aa20.19■□□□□ 0.82
SCLT1-209ENST00000511426 POLKQ9UBT6 870 aa20.19■□□□□ 0.82
SCLT1-209ENST00000511426 ESCO1Q5FWF5 840 aa20.17■□□□□ 0.82
SCLT1-209ENST00000511426 MST1RQ04912 1400 aa20.17■□□□□ 0.82
SCLT1-209ENST00000511426 KIF24Q5T7B8 1368 aa20.17■□□□□ 0.82
SCLT1-209ENST00000511426 PNNQ9H307 717 aaKnown RBP20.16■□□□□ 0.82
SCLT1-209ENST00000511426 PIK3C2AO00443 1686 aa20.16■□□□□ 0.82
SCLT1-209ENST00000511426 DIAPH1O60610 1272 aaKnown RBP20.15■□□□□ 0.82
SCLT1-209ENST00000511426 RBM33Q96EV2 1170 aaKnown RBP20.15■□□□□ 0.82
SCLT1-209ENST00000511426 RUNDC1Q96C34 613 aa20.13■□□□□ 0.81
SCLT1-209ENST00000511426 MAP2P11137 1827 aaKnown RBP20.13■□□□□ 0.81
SCLT1-209ENST00000511426 PSME1Q06323 249 aa20.12■□□□□ 0.81
SCLT1-209ENST00000511426 ZRANB1Q9UGI0 708 aa20.1■□□□□ 0.81
SCLT1-209ENST00000511426 IQSEC2Q5JU85 1478 aa20.1■□□□□ 0.81
SCLT1-209ENST00000511426 U2AF1L5P0DN76 240 aaPredicted RBP20.1■□□□□ 0.81
SCLT1-209ENST00000511426 U2AF1Q01081 240 aaKnown RBP eCLIP20.1■□□□□ 0.81
SCLT1-209ENST00000511426 ZNF521Q96K83 1311 aa20.09■□□□□ 0.81
SCLT1-209ENST00000511426 XIRP1Q702N8 1843 aaKnown RBP20.09■□□□□ 0.81
SCLT1-209ENST00000511426 SBNO1A3KN83 1393 aa20.08■□□□□ 0.81
SCLT1-209ENST00000511426 NLRP6P59044 892 aa20.08■□□□□ 0.81
SCLT1-209ENST00000511426 ABTB2Q8N961 1025 aa20.08■□□□□ 0.81
SCLT1-209ENST00000511426 GTF3C3Q9Y5Q9 886 aa20.08■□□□□ 0.81
SCLT1-209ENST00000511426 EMILIN1Q9Y6C2 1016 aa20.08■□□□□ 0.81
SCLT1-209ENST00000511426 ZNF335Q9H4Z2 1342 aaPredicted RBP20.08■□□□□ 0.8
SCLT1-209ENST00000511426 FCHSD2O94868 740 aa20.07■□□□□ 0.8
SCLT1-209ENST00000511426 ORAI2Q96SN7 254 aa20.07■□□□□ 0.8
SCLT1-209ENST00000511426 FLT4P35916 1363 aa20.07■□□□□ 0.8
SCLT1-209ENST00000511426 CCDC27Q2M243 656 aa20.07■□□□□ 0.8
SCLT1-209ENST00000511426 TRPM3Q9HCF6 1732 aaPredicted RBP20.06■□□□□ 0.8
SCLT1-209ENST00000511426 NPHP3Q7Z494 1330 aa20.06■□□□□ 0.8
SCLT1-209ENST00000511426 RTL1A6NKG5 1358 aa20.06■□□□□ 0.8
SCLT1-209ENST00000511426 KCNH5Q8NCM2 988 aa20.06■□□□□ 0.8
SCLT1-209ENST00000511426 MARF1Q9Y4F3 1742 aaKnown RBP20.06■□□□□ 0.8
SCLT1-209ENST00000511426 APAF1O14727 1248 aa20.05■□□□□ 0.8
SCLT1-209ENST00000511426 U2SURPO15042 1029 aaKnown RBP20.05■□□□□ 0.8
SCLT1-209ENST00000511426 PAK3O75914 559 aaPredicted RBP20.05■□□□□ 0.8
SCLT1-209ENST00000511426 IL13P35225 146 aa20.05■□□□□ 0.8
SCLT1-209ENST00000511426 PPM1GO15355 546 aaPredicted RBP20.04■□□□□ 0.8
SCLT1-209ENST00000511426 RRS1Q15050 365 aaKnown RBP20.04■□□□□ 0.8
SCLT1-209ENST00000511426 FOXO3O43524 673 aa20.03■□□□□ 0.8
SCLT1-209ENST00000511426 CCDC146Q8IYE0 955 aa20.03■□□□□ 0.8
SCLT1-209ENST00000511426 SLIT3O75094 1523 aa20.03■□□□□ 0.8
SCLT1-209ENST00000511426 NEFMP07197 916 aa20.03■□□□□ 0.8
SCLT1-209ENST00000511426 PLEKHF1Q96S99 279 aa20.03■□□□□ 0.8
SCLT1-209ENST00000511426 PHRF1Q9P1Y6 1649 aaKnown RBP20.03■□□□□ 0.8
SCLT1-209ENST00000511426 GOLGA2Q08379 1002 aa20.02■□□□□ 0.8
SCLT1-209ENST00000511426 KRT28Q7Z3Y7 464 aa20.02■□□□□ 0.8
SCLT1-209ENST00000511426 PHF23Q9BUL5 403 aaPredicted RBP20.02■□□□□ 0.8
SCLT1-209ENST00000511426 MAP3K19Q56UN5 1328 aa20.02■□□□□ 0.8
SCLT1-209ENST00000511426 MAPK8IP3Q9UPT6 1336 aa20.02■□□□□ 0.8
SCLT1-209ENST00000511426 NEFLP07196 543 aa20.01■□□□□ 0.79
SCLT1-209ENST00000511426 TCP11L2Q8N4U5 519 aa20.01■□□□□ 0.79
SCLT1-209ENST00000511426 USP19O94966 1318 aa20■□□□□ 0.79
SCLT1-209ENST00000511426 NFAT5O94916 1531 aa20■□□□□ 0.79
SCLT1-209ENST00000511426 PEAK1Q9H792 1746 aa20■□□□□ 0.79
SCLT1-209ENST00000511426 FBLN1P23142 703 aa20■□□□□ 0.79
SCLT1-209ENST00000511426 ALS2Q96Q42 1657 aa20■□□□□ 0.79
SCLT1-209ENST00000511426 ARHGEF10O15013 1369 aa19.98■□□□□ 0.79
SCLT1-209ENST00000511426 E9PSI1 815 aa19.98■□□□□ 0.79
SCLT1-209ENST00000511426 WDR63Q8IWG1 891 aa19.98■□□□□ 0.79
SCLT1-209ENST00000511426 RSPH6AQ9H0K4 717 aa19.98■□□□□ 0.79
SCLT1-209ENST00000511426 AMPHP49418 695 aa19.97■□□□□ 0.79
SCLT1-209ENST00000511426 SALL2Q9Y467 1007 aaPredicted RBP19.97■□□□□ 0.79
SCLT1-209ENST00000511426 PXDNQ92626 1479 aa19.97■□□□□ 0.79
SCLT1-209ENST00000511426 RGPD1P0DJD0 1748 aa19.97■□□□□ 0.79
SCLT1-209ENST00000511426 EIF4A2Q14240 407 aaKnown RBP19.97■□□□□ 0.79
SCLT1-209ENST00000511426 WWC1Q8IX03 1113 aa19.97■□□□□ 0.79
SCLT1-209ENST00000511426 TNS3Q68CZ2 1445 aa19.96■□□□□ 0.79
SCLT1-209ENST00000511426 SLAIN2Q9P270 581 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 101.5 ms